Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2353
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 29 1.8
04_04_1125 + 31085106-31085714 29 2.3
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 28 4.1
11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095 27 5.4
08_02_0487 + 17691963-17692048,17693337-17693448,17694128-176943... 27 5.4
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 27 5.4
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590... 27 7.2
03_06_0472 - 34172741-34172755,34172858-34172896,34173218-341733... 27 7.2
03_06_0159 - 32059984-32060694 27 7.2
01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045... 27 7.2
12_02_0352 - 17862577-17863528,17864076-17864827 27 9.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 27 9.5
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 9.5
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 27 9.5
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.1 bits (62), Expect = 1.8
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Frame = +2
Query: 98 HDEAPQVEAKYDHQSLFGEFGHHHQIEHEHAKFYQSIKFEHFHPVPVYVKKEHSHLLKHP 277
H+ + K +H G HHH H+H++ +Q +H H ++ S++ P
Sbjct: 565 HNSLTENSCKENHSHCHGH-DHHHHHHHDHSEHHQQ-SGDHAH-------QDISNISSDP 615
Query: 278 LEKGKLEQNLKLIHPETEHKH--GGGLVLED------DRHNIEHHI 391
LE L IH H GGL + +RH+I+H++
Sbjct: 616 ---AILEIPLNSIHTHCSEAHSCNGGLQSSENHNKSRNRHHIDHNM 658
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 408 LKPAKAIWCSMLCLSSSRTSPPPC 337
L PA A WC C +++ PPPC
Sbjct: 22 LAPAAATWCGSNC-PTTKPPPPPC 44
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 182 EHAKFYQSIKFEHFHPVPVYVKKEHSHLLKHPL 280
E + S+ F FHP PVY S++L+ L
Sbjct: 713 EEEALFSSLSFPSFHPQPVYSTVMQSNVLQDEL 745
>11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095
Length = 270
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 191 WRVRVQFDDGVQIHQTKTGGRISLRLGELHHVLFPGK--AVTAAMSPRKIWYFILV 30
W+V + + +GV+I + + G R L H + PGK AV A+ K W LV
Sbjct: 59 WKV-LAYCNGVEISKRRAGAAHVFRSRWLLHAVSPGKFMAVANAVDAAKQWESDLV 113
>08_02_0487 +
17691963-17692048,17693337-17693448,17694128-17694314,
17694848-17695347,17695480-17695593,17696065-17696220,
17696306-17696395
Length = 414
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 284 KGKLEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAFAGLSTEALNTGVWNKVW 448
+G ++ H E H HG + E I H ++F + EA+ T V + W
Sbjct: 119 EGNVQGTSSSSHKEPSHPHGKDRISELPNDLIHHIMSFLSMK-EAVRTSVLSHWW 172
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -2
Query: 372 CLSSSRTSPPPCLCSVSG*ISLRFCSNFPFSRGCLRRWLC 253
C PP L V +F FSRG LR W C
Sbjct: 92 CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131
>06_01_0789 -
5901888-5902940,5903685-5903824,5904606-5904665,
5904794-5904854
Length = 437
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 206 IKFEHFHPVPVYVKKEHSHLLKHPLEKGKLEQNLKLIHPETEHKHGGGLVL-EDDRHNIE 382
+K +H H V KEH H+ E G + +N L+ + LV DD +
Sbjct: 216 VKAKHDHEAGVSKSKEHDHVCYKCHEFGHIRRNCPLL--KKRRSASASLVAHSDDSESSS 273
Query: 383 HHI 391
H I
Sbjct: 274 HEI 276
>03_06_0472 -
34172741-34172755,34172858-34172896,34173218-34173309,
34173633-34173708,34174273-34174668
Length = 205
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 262 PSQAPS*KGKIRAKPQADSPRD*TQARRWTCSRGRQTQH 378
P P G I A P P + R C RG+Q QH
Sbjct: 30 PMVRPHKGGAIAASPLCQVPGEPRTVHRQDCRRGQQHQH 68
>03_06_0159 - 32059984-32060694
Length = 236
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 417 ASVLKPAKAIWCSMLCLSSSRTSPPPCLCSVSG 319
AS + A+ S + LSS+ TSPPP ++G
Sbjct: 50 ASAKTFSAALALSSVLLSSAATSPPPAAADIAG 82
>01_06_1246 -
35703119-35703811,35704033-35704074,35704355-35704576,
35705077-35705466,35705560-35705637
Length = 474
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 223 SPRSCVREEGAQPPSQAPS*KGKIRAKPQADS 318
S R R+ + PPS+ PS GKIR DS
Sbjct: 321 SSRPPSRQSPSTPPSRVPSVTGKIRPASPRDS 352
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 77 LLFLGIIHDEAPQVEAKYDHQSLFGEFGHHHQ 172
L L I HD E D + G +GHHHQ
Sbjct: 367 LSMLFIPHDTPDPEEEDDDGEKHGGSYGHHHQ 398
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 26.6 bits (56), Expect = 9.5
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -3
Query: 266 EGGCAPSSRTQERGESVRT*STGKIWRVRVQFDDGVQIHQTKTGGRISLRLGELHHVL-F 90
+GG AP+SR +E + V S G ++ R DG + + E H +
Sbjct: 487 DGGAAPASREEE--QMVGRGSLGTVY--RAVLSDGRMVAVKRLRDANPCARDEFHRYMDL 542
Query: 89 PGKAVTAAMSPRKIWYFILVAKLLLY 12
G+ + P + +Y+ KLL+Y
Sbjct: 543 IGRLRHPNLVPLRAFYYAKQEKLLIY 568
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 383 VQCCVCRPREQVHRRACVQSLGESA*GFALI-FPFQEGA*EGGCAPSSRTQERGESVRT 210
++CC+ ++++R+ACV + E+ ++ +P A GG R + VRT
Sbjct: 373 LECCLDSIPDEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRT 431
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 161 HHHQIEHEHAKFYQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKLEQ 301
HHHQ ++EH I F+H Y + +H + H + + +Q
Sbjct: 157 HHHQQQYEH---QNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQ 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,468
Number of Sequences: 37544
Number of extensions: 307403
Number of successful extensions: 1042
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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