Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2352
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 69 3e-13
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 67 1e-12
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 0.44
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 26 1.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 2.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 2.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 3.1
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 4.1
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 24 9.4
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 24 9.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 68.5 bits (160), Expect = 3e-13
Identities = 34/55 (61%), Positives = 40/55 (72%)
Frame = +1
Query: 133 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 297
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GA
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGA 57
Score = 31.9 bits (69), Expect = 0.035
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR++ SIEQK E G+ + ++ KE+
Sbjct: 58 RRASWRIVSSIEQKEESKGNTAQVELIKEY 87
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 66.9 bits (156), Expect = 1e-12
Identities = 34/56 (60%), Positives = 42/56 (75%)
Frame = +1
Query: 130 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 297
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GA
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGA 56
Score = 33.9 bits (74), Expect = 0.009
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR+I SIEQK E G+ R+ + KE+
Sbjct: 57 RRASWRIISSIEQKEESRGNTRQAALIKEY 86
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 0.44
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 23 FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 187
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 188 DM 193
+
Sbjct: 99 HL 100
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 1.8
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 127 TMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGAPTV 306
++S++K + + + + A D++ +AM + ELS E N + AY ++GAP V
Sbjct: 270 SISLEKLKSLLAKRKEKDAFGIDEVVSAMIGDALSISELSKVEPNSIESAYDLLLGAPIV 329
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 2.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 35 EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 172
EKL+ C HF +G+ + L RC +T CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 2.3
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 106 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 285
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 77 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 199
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 4.1
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +1
Query: 61 AGSNTFFPFRQGHQ*ISSLPSSTMSVDK---EELVQRAKL--AEQAERYDDMAAAMKEVT 225
AGS+ FP+ +GH +S S M VD+ E +V+ + A++A YD + A+ T
Sbjct: 96 AGSSFMFPYNRGHP-LSKRHDSIM-VDEFGHEYIVEGDSIASADEAIDYDALYASWTAET 153
Query: 226 ETGVELSNEERNLLSVAYK 282
+ + + E + +A K
Sbjct: 154 KAPILAIDIENIYIELAMK 172
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 128 VDDGRELIH*CPCRKGKNVFEPANLSTISVF 36
+++ ELI P GK VF +LST +V+
Sbjct: 268 LNEDEELISSSPSEVGKRVFRLIDLSTGNVY 298
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 106 ISSLPSSTMSVDKEELVQRAKL 171
I SLP+S + K+E +Q++KL
Sbjct: 329 IESLPASLKQLIKDEYLQKSKL 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,613
Number of Sequences: 5004
Number of extensions: 28938
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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