Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2352
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 66 9e-12
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 66 1e-11
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 64 4e-11
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 64 5e-11
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 63 6e-11
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 60 6e-10
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 40 9e-04
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 39 0.001
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076... 28 2.2
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 27 6.7
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 8.9
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 66.1 bits (154), Expect = 9e-12
Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Frame = +1
Query: 121 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVG 294
S+ + +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+G
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 61
Query: 295 A 297
A
Sbjct: 62 A 62
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR+I SIEQK E G+E + + K++
Sbjct: 63 RRASWRIISSIEQKEESRGNEDRVTLIKDY 92
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 65.7 bits (153), Expect = 1e-11
Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Frame = +1
Query: 121 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVG 294
S + +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+G
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 279
Query: 295 A 297
A
Sbjct: 280 A 280
Score = 33.1 bits (72), Expect = 0.077
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR+I SIEQK E G+E + + KE+
Sbjct: 281 RRASWRIISSIEQKEESRGNEDRCTLIKEY 310
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 64.1 bits (149), Expect = 4e-11
Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Frame = +1
Query: 124 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETG--VELSNEERNLLSVAYKNVVGA 297
S +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GA
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERNLLSVAYKNVIGA 61
Score = 31.1 bits (67), Expect = 0.31
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR+I SIEQK E G+E KE+
Sbjct: 62 RRASWRIISSIEQKEESRGNEAYVASIKEY 91
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 63.7 bits (148), Expect = 5e-11
Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Frame = +1
Query: 136 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGA 297
+ +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GA
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERNLLSVAYKNVIGA 56
Score = 32.7 bits (71), Expect = 0.10
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTE--GSERKQQMAKEF 382
RR+SWR++ SIEQK E G+E + KE+
Sbjct: 57 RRASWRIVSSIEQKEEGRGNEEHVTLIKEY 86
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 63.3 bits (147), Expect = 6e-11
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Frame = +1
Query: 142 KEELVQRAKLAEQAERYDDMAAAMKEVTET-----GVELSNEERNLLSVAYKNVVGA 297
+EE+V AKLAEQAERY++M M++V G EL+ EERNLLSVAYKNV+GA
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVIGA 66
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTEG 349
RR+SWR++ SIEQK EG
Sbjct: 67 RRASWRIVSSIEQKEEG 83
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 60.1 bits (139), Expect = 6e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +1
Query: 139 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 297
++E++V+ AKLAEQAERYDDM MK + V++S EER L SV +K +GA
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSVGFKKTIGA 55
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTEGSER 358
RR+SWR++ S+EQK ++
Sbjct: 56 RRASWRILESLEQKVTAGDQ 75
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 39.5 bits (88), Expect = 9e-04
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 199 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGAPTVIM 312
M AM V + L+ EERNLLSV YKN++GA M
Sbjct: 1 MVEAMNSVAKLDEGLTKEERNLLSVGYKNLIGAKRAAM 38
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 232 GVELSNEERNLLSVAYKNVVGA 297
G EL+ EERNLLSVAYKNV+GA
Sbjct: 18 GEELTVEERNLLSVAYKNVIGA 39
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 299 RRSSWRVIFSIEQKTEG 349
RR+SWR+I SIEQK EG
Sbjct: 40 RRASWRIISSIEQKEEG 56
>09_02_0513 -
10105746-10106438,10106523-10107040,10107156-10107695,
10107791-10108103
Length = 687
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 106 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVA 276
I S+PS+ DKE L +A + D + +KE ++ + NE RN+L +A
Sbjct: 325 IQSMPSAMYIPDKEGLTP-LHVAAKMGHLDVIQDMLKECPDSAELVDNEGRNILHLA 380
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 70 NTFFPFRQGHQ*ISSL 117
+T+FPF+QGH IS+L
Sbjct: 311 STYFPFKQGHLAISTL 326
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 212 IAAAMSSYRSACSANLARCTSSSLSTDIVDDGREL 108
+A A+ + S+C+ N CTSS L ++D +L
Sbjct: 172 MARALLATLSSCTRNRTMCTSSGLLAILLDAAEKL 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,530,783
Number of Sequences: 37544
Number of extensions: 212838
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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