Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2352
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.70 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    20   8.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    20   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 297 GTYDILISN*KEVPLLVAKFDAGFRHFLHRGRHV 196
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 348 PSVFCSIEKMTRHDDRRGTYDILISN*KEVPLLV---AKFDAGFRH 220
           P++     K TRH    G   +L+ N KE+ +L+    KF A   H
Sbjct: 55  PNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAH 100


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 312 HDDRRGTYDILISN 271
           H+D+RG Y + I++
Sbjct: 495 HEDKRGCYQLAINH 508


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 312 HDDRRGTYDILISN 271
           H+D+RG Y + I++
Sbjct: 585 HEDKRGCYQLAINH 598


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 363 CFLSEPSVFCSIEKMTRHDD 304
           C ++   + C++EKM   DD
Sbjct: 109 CMVARKYIDCALEKMKFLDD 128


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 363 CFLSEPSVFCSIEKMTRHDD 304
           C ++   + C++EKM   DD
Sbjct: 109 CMVARKYIDCALEKMKFLDD 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,926
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)