Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2350
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    28   1.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   8.6  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +1

Query: 7   VTVPVEKSIKSALKR*TAFLRTFALS*ICILS*MGKKKREISYSLNYEMDVAARCYAEEH 186
           V  P +  +++ +K+   F+   AL+     S +GK KR ++ S     ++    Y+ E 
Sbjct: 607 VVAPKKVQLRTKIKK-KFFMPENALNGFITASALGKPKRALAKSEESPFEICPVTYSIEQ 665

Query: 187 KQRLSVYLLIT*RGV 231
           +++L  Y  +  RG+
Sbjct: 666 EKKLEKYKRVCLRGL 680


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 492 TSNQETSNLKDYAIPGAIKLHFIS 563
           +S+ + S  K+Y +P AI LHFIS
Sbjct: 452 SSHLDYSTFKNYLMPLAITLHFIS 475


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 423 TSILWWPSCNLRRIRIEIRLFGK 355
           T  LW P+C+   I ++I LF K
Sbjct: 68  TVYLWDPTCDTSSIGLQIHLFSK 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,979
Number of Sequences: 5004
Number of extensions: 59895
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)