Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2350
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 127 FLSFFSPFNSVYISNSEQKSGGTRFNV*VP 38
           +LS  +P  +VY +N E K+  + FN+  P
Sbjct: 26  YLSPRTPIKNVYKNNIETKNQLSPFNIDTP 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 627 EKRNEPFYTLIFLANGKSNS 568
           +KR+ P Y + F  NG  N+
Sbjct: 206 DKRSHPAYNMTFAQNGPFNT 225


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 162 SNIHFIIKTVRNFSLFFPHLTQYTYLT 82
           +NI  ++K +   +  +P  T Y YLT
Sbjct: 339 NNIRPMVKQIDTVAAEWPATTNYLYLT 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,012
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)