Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2348
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.38 
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    27   2.0  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   3.5  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   8.1  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +2

Query: 245 PRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISSFLIRSNKETRAPSK 424
           P  S SS +S         LAPS      PPL+P +P   F   +S +  ++K   A + 
Sbjct: 150 PSTSTSSIVSSSYGDAPSYLAPSKPNR-SPPLKPEDPFASFNSSASAIAAASKSAAASAS 208

Query: 425 ALGSLT 442
           AL S T
Sbjct: 209 ALSSDT 214


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 368 LCISSF-LIRSNKETRAPSKALGSLTYPIRPFASTHI*QPYVIFGNIYLS 514
           +CISS  L+      +  S  +G L  P +  +S +I +PYVIF   + S
Sbjct: 1   MCISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRS 50


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 339 RGGHIARRSDGANANATKFSTGDNAL----EREQRGENL 235
           RGG++   S  ANANA+   TG  +      + +RGE +
Sbjct: 33  RGGNVVVGSSSANANASTAETGKKSAGGSKPKRRRGERI 71


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 197 LHSTFFLLRLKLNFV*RLNIISHCN 123
           LH+ FF+L + L  V   +++ HC+
Sbjct: 360 LHNAFFILHVSLGEVPDFHLLFHCS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,795
Number of Sequences: 5004
Number of extensions: 48153
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)