Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2348
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546...    31   0.68 
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251...    30   1.6  
01_03_0197 + 13700225-13700278,13701178-13702422                       29   2.1  
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    29   2.7  
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595...    27   8.3  
01_06_0013 - 25579904-25580002,25580373-25580435,25580803-255809...    27   8.3  

>03_06_0206 -
           32353308-32353566,32353784-32354024,32354408-32354627,
           32354981-32355316,32355632-32355688,32355787-32355810
          Length = 378

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 273 DNALEREQRGENLNKMCVSDKILSHS 196
           D AL REQ+ +N  KM V DKI  +S
Sbjct: 295 DKALSREQKNKNAGKMYVQDKIEEYS 320


>07_01_0347 -
           2509229-2509487,2509682-2509922,2510292-2510511,
           2510943-2511278,2512047-2512103,2512187-2512210
          Length = 378

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 273 DNALEREQRGENLNKMCVSDKILSHS 196
           D AL REQ+ +N  KM V DKI  +S
Sbjct: 295 DKALSREQKNKNGGKMYVQDKIEEYS 320


>01_03_0197 + 13700225-13700278,13701178-13702422
          Length = 432

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 466 YPHLTTVCHLWQHLLIKD 519
           YP + +VCH+W H LI D
Sbjct: 20  YPTVLSVCHVWTHELIMD 37


>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
            43147383-43150081
          Length = 1029

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 260  SSALSPVENFV--ALALAPSLLRAICPPLQPYNPTVRFL 370
            S +  P+++F+  A A  PSLL  + P LQ   P +RFL
Sbjct: 985  SKSKVPLQSFLFPAKAKKPSLLARVTPVLQKQQPDLRFL 1023


>10_02_0157 -
           5954439-5954801,5956244-5956270,5956465-5956526,
           5956971-5957592
          Length = 357

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 293 ALALAPSL--LRAICPPLQPYNPTVRFLCISSFLIRSNKETRAPSKALGSLTYPIR 454
           A+A+ P+L  + AI PP  P  P     C++     S     A +K  G+   P++
Sbjct: 99  AIAVPPALPPIPAIVPPSLPPTPEANLPCVAELAPCSEFYRNATAKPTGACCAPLK 154


>01_06_0013 -
           25579904-25580002,25580373-25580435,25580803-25580913,
           25581708-25581968,25582156-25582201,25582365-25582503,
           25582612-25582816
          Length = 307

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 182 KRSNVECDNILSLTHILLRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQP 346
           KR N   DN+ SLT  +       S S  ++ + N +   L  ++ R   PP++P
Sbjct: 93  KRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNNQIKKGLLSTIAREDIPPIEP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,737
Number of Sequences: 37544
Number of extensions: 308458
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)