Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2348
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    37   0.012
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.021
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.021
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.021
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    36   0.021
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    35   0.037
AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical...    29   3.2  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    28   5.6  
Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY669394-1|AAU05399.1|  487|Caenorhabditis elegans aromatic L-am...    27   9.8  
AY669393-1|AAU05398.1|  478|Caenorhabditis elegans aromatic L-am...    27   9.8  
AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical...    27   9.8  
AF047651-8|AAV58886.1|  514|Caenorhabditis elegans Biogenic amin...    27   9.8  
AF047651-7|AAC02721.2|  523|Caenorhabditis elegans Biogenic amin...    27   9.8  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPR-ALEGARVSL-LDRIRNEEMHK 367
           LR  +FD  +LP +TYG + W   K L+  VR+   ALE   V L L   R   +H+
Sbjct: 46  LRANLFDSTVLPALTYGSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHR 102


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 367
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 735 IRANLFDSIILPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 791


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531  LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 367
            +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 910  IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 966


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 367
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 649 IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 705


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPRA-LEGARVSL-LDRIRNEEMHK 367
           +R  +FD  +LP +TYG + W   K L   VR+  A LE   V + L + R  ++H+
Sbjct: 261 IRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHR 317


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 531 LRTIIFDK*MLPKMTYGCQMWVLAKGLIG*VRLPR-ALEGARVSL-LDRIRNEEMHK 367
           LR  +FD  +LP +TYG + W   K L   VR+   ALE   V L L   R   +H+
Sbjct: 683 LRANLFDSTVLPALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQRKRNIHR 739


>AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical
           protein Y19D10A.11 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 227 ILLRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISSFLIRSN 400
           I LR       + A+     +V   LAP ++  ICP   P   T+ FL I+  +I  N
Sbjct: 406 IQLRCRQHVHFAIAVISFTAYVVQFLAPIIVSIICPDNTPEQWTILFLFITGVIIVCN 463


>AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical
           protein F56A4.12 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 227 ILLRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISSFLIRSN 400
           I LR       + A+     +V   LAP ++  ICP   P   T+ FL I+  +I  N
Sbjct: 390 IQLRCRQHVHFAIAVISFTAYVVQFLAPIIVSIICPDNTPEQWTILFLFITGVIIVCN 447


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 206 NILSLTHIL-LRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISS 382
           N++ +  ++ LR       + A+     ++   LAP ++  ICP   P   T  FL IS+
Sbjct: 613 NVMGVFKVVQLRCLQHVHFAIAVISFTTYLVQFLAPVIVGIICPDNTPAQWTTLFLVISA 672

Query: 383 FLI 391
            +I
Sbjct: 673 III 675


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 206 NILSLTHIL-LRFSPRCSLSSALSPVENFVALALAPSLLRAICPPLQPYNPTVRFLCISS 382
           N++ +  ++ LR       + A+     ++   LAP ++  ICP   P   T  FL IS+
Sbjct: 656 NVMGVFKVVQLRCLQHVHFAIAVISFTTYLVQFLAPVIVGIICPDNTPAQWTTLFLVISA 715

Query: 383 FLI 391
            +I
Sbjct: 716 III 718


>Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical
           protein F49B2.1 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -3

Query: 465 LAKGLIG*VRLPRALEGARVSLLDRIRNEEMHKN-LTVGLYG*-----RGGHIARRSDGA 304
           L K ++G   LPR L     SL   I +E + K+ +T  L G      +GG I RR+DG 
Sbjct: 235 LEKLVVGHQNLPRTLNQRMASLFQGISHEVLPKDRVTRHLDGGEEVMFKGGTIIRRNDGI 294

Query: 303 NA 298
            A
Sbjct: 295 EA 296


>Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical
           protein F09C3.4 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 284 SRLAITHWKES-NAGKTLIKCV 222
           S+L +  WKE  N  KTL+KCV
Sbjct: 255 SKLQMLKWKEIINTSKTLVKCV 276


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 427 SWESN-LPDKAFCKYPHLTTVCHL-WQHLLIKDYRP*ALLLSGWTSSQPTW 573
           SW  + +P   FC YPH+ +V  + W+  L K     A+ LS W     TW
Sbjct: 346 SWYFHQIPFLLFCDYPHVASVSTIPWRQFLWKVPLLAAVELS-WNVYPSTW 395


>Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical
           protein B0272.3 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 366 NLTVGLYG*RGGHIARRSDGANANATKFSTGDNALEREQRG 244
           N+T+   G  G  IA+ S  A  N T   +  +ALE+ Q+G
Sbjct: 24  NVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQG 64


>AY669394-1|AAU05399.1|  487|Caenorhabditis elegans aromatic L-amino
           acid decarboxylase protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 220 HTHFIKVFPALLSFQCVIA---SRELCGIG 300
           H HF   FP  LS+Q ++A   S  + GIG
Sbjct: 73  HPHFFAYFPTALSYQSIMADILSGGIAGIG 102


>AY669393-1|AAU05398.1|  478|Caenorhabditis elegans aromatic L-amino
           acid decarboxylase protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 220 HTHFIKVFPALLSFQCVIA---SRELCGIG 300
           H HF   FP  LS+Q ++A   S  + GIG
Sbjct: 73  HPHFFAYFPTALSYQSIMADILSGGIAGIG 102


>AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical
           protein Y111B2A.20 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 413 APSKALGSLTYPIRPFASTHI*QPYVIFGNIYLSKIIVLKHYCLVV 550
           A ++AL  L YP +  A +    P +IFG ++  K    + YC V+
Sbjct: 108 ASNQALQYLPYPTQVLAKSCKPIPVMIFGVLFAHKSYHWRKYCYVL 153


>AF047651-8|AAV58886.1|  514|Caenorhabditis elegans Biogenic amine
           synthesis relatedprotein 1, isoform a protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 220 HTHFIKVFPALLSFQCVIA---SRELCGIG 300
           H HF   FP  LS+Q ++A   S  + GIG
Sbjct: 73  HPHFFAYFPTALSYQSIMADILSGGIAGIG 102


>AF047651-7|AAC02721.2|  523|Caenorhabditis elegans Biogenic amine
           synthesis relatedprotein 1, isoform b protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 220 HTHFIKVFPALLSFQCVIA---SRELCGIG 300
           H HF   FP  LS+Q ++A   S  + GIG
Sbjct: 73  HPHFFAYFPTALSYQSIMADILSGGIAGIG 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,320
Number of Sequences: 27780
Number of extensions: 269353
Number of successful extensions: 537
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)