Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2348
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.72 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.72 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 179 RKRSNVECDNILSLTHILLRFSPRCSLSSA-LSPVENFVALALAPSLLRAICPPLQP 346
           R R + E  N+       LR   +C+L  A   PV   +  +LAP +LR  CP   P
Sbjct: 30  RSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLK-SLAPLVLRGACPQCSP 85


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 179 RKRSNVECDNILSLTHILLRFSPRCSLSSA-LSPVENFVALALAPSLLRAICPPLQP 346
           R R + E  N+       LR   +C+L  A   PV   +  +LAP +LR  CP   P
Sbjct: 30  RSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLK-SLAPLVLRGACPQCSP 85


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 92  LKQEFSSENLFRRQWMCHTLSYVEPG 15
           +K E+S +  FR QW+   L + + G
Sbjct: 76  IKMEYSVQLTFREQWLDERLRFNDFG 101


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 477 DNRMSSLATFTYQRLSSL 530
           DNR+  L  F ++RLS L
Sbjct: 851 DNRIRELKGFEFERLSHL 868


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 400 QGNPSALQGSWESNL 444
           QGNP  +Q  W+ N+
Sbjct: 327 QGNPICVQIPWDKNV 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,928
Number of Sequences: 438
Number of extensions: 3205
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)