Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2346
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal ...    32   0.22 
U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal ...    32   0.22 
AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.      32   0.22 

>U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform b protein.
          Length = 372

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 224 INCIKTNASKCEHV*LYMITDSMIDNYCQITKKDQSHIRKQYLL--IYCG 367
           +NC        E   LY++ + M  N CQ+ + D  H R  YLL  + CG
Sbjct: 91  LNCFTPQKKLDEFNDLYIVMELMDANLCQVIQMDLDHERLSYLLYQMLCG 140


>U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform a protein.
          Length = 463

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 224 INCIKTNASKCEHV*LYMITDSMIDNYCQITKKDQSHIRKQYLL--IYCG 367
           +NC        E   LY++ + M  N CQ+ + D  H R  YLL  + CG
Sbjct: 182 LNCFTPQKKLDEFNDLYIVMELMDANLCQVIQMDLDHERLSYLLYQMLCG 231


>AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.
          Length = 463

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 224 INCIKTNASKCEHV*LYMITDSMIDNYCQITKKDQSHIRKQYLL--IYCG 367
           +NC        E   LY++ + M  N CQ+ + D  H R  YLL  + CG
Sbjct: 182 LNCFTPQKKLDEFNDLYIVMELMDANLCQVIQMDLDHERLSYLLYQMLCG 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,330,452
Number of Sequences: 27780
Number of extensions: 191448
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)