Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2343
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567...    29   3.9  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    28   5.1  
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59...    27   8.9  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    27   8.9  

>11_01_0689 -
           5678227-5678343,5678475-5678636,5678751-5678846,
           5679345-5679406,5679648-5679723,5679847-5679929,
           5680525-5680853,5681402-5681448,5681707-5681843,
           5682093-5682126
          Length = 380

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 252 VLPPVIKQCEDFRECVG*LSVEGLLCDLLR 341
           VLP    +C D R C   LS E  LCDLLR
Sbjct: 91  VLPVFTGECGDCRHC---LSEESNLCDLLR 117


>10_08_1005 -
           22179407-22180122,22180210-22180653,22180737-22180861,
           22180939-22181169,22181250-22181805,22181896-22182312,
           22182405-22183216,22183653-22183738,22184464-22184534,
           22184553-22185573,22186018-22186062,22186252-22186326,
           22186797-22186871
          Length = 1557

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 417 CKGSTSAKKKLGVHDSESQ 473
           CKGS+S+K+K  VH S+++
Sbjct: 787 CKGSSSSKQKQSVHSSQNE 805


>11_01_0075 +
           591537-591618,592410-592648,592840-593037,593129-593188,
           593313-593456,594655-594819,595611-595709,596057-596125,
           596216-596312,596922-597013,597085-597255,598053-598184,
           598479-598559,599131-599247,599344-599433
          Length = 611

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 6   ICSFIYFLLHKWMD-ELTAHLVL 71
           + SF YF LH+W D   T HL L
Sbjct: 408 VSSFFYFQLHRWKDPPFTIHLHL 430


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 222 MVPTRADSQEVLPPVIKQCEDFRECVG*LSVEGLLCD 332
           +  T +D  ++L      C   R+CVG +S E L CD
Sbjct: 554 LTDTESDGSKILKNKCCICLGGRDCVGAVSQENLQCD 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,010
Number of Sequences: 37544
Number of extensions: 329536
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)