Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2340
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 30 0.39
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.90
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 28 1.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 3.6
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 26 4.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 4.8
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 6.3
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 6.3
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 8.4
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 554 SEAPSNKQTVFSRLGSNESVTNATKPSAKPIYAR-LGAKSAQVDHVI 691
S PS++ T + SN + ++ P+A+P+ AR LG S+Q +
Sbjct: 253 SSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKSAV 299
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 198 RSTSETWG*HEWEMLLLYYVIQNKYTKMQLVIRCL 302
RS S WG WE +L+ VI + T Q V+ L
Sbjct: 278 RSKSRVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 28.3 bits (60), Expect = 1.2
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Frame = +2
Query: 110 AGIPSDVAATYALTFTENRI-QSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQVHENAA 286
A + +D+ + T + QSD+ +D+N+E D G T G H +
Sbjct: 969 AYVGTDMTNAFGTTTKPKDVSQSDIKVDINRESNSDNGETITG------THDVYRQTDNP 1022
Query: 287 RDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLKRKAVQP 466
K+ S+T+ +KV T T+ QP+ + + T N L+ +V+
Sbjct: 1023 EIKLPSDTASSKVD----THNPTVTQPTDDTGGLNSYNTEN----PLLTNNTLEPSSVEA 1074
Query: 467 NDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSRLGSNESVT 616
+ +S+K+ K+++ L L++S +N T + + S S T
Sbjct: 1075 IVSSKDSDKHAKESK-----GKSLAPLISSRVSTNDTTNVAGIRSQRSFT 1119
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -2
Query: 711 RASFCIGMTWS-TC---ADFAPNLAYMGLADGFVALVTD 607
R +FC+G+ WS TC + + GLA F+AL D
Sbjct: 603 RKTFCVGLNWSYTCEMLLEIVDCINDNGLAQIFLALTQD 641
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 624 QNRPLSPYTRDWVQNLHKWTT 686
+NRPL+P DW Q + W T
Sbjct: 256 KNRPLAPKGDDWEQAVAYWKT 276
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 191 LNKEYLRDMGITRMGDVIAILRHSK-QVHENAARDKVLSNTSVNKVPVAAITGRSTLPQP 367
+N ++L + IT A R K + H + A K+ + NKV A+T +STLP
Sbjct: 160 MNNQFLMNKPITVS---YAFKREGKGERHGDIAERKLAAAAKKNKV---AVTPQSTLPPG 213
Query: 368 SSPAS 382
SPA+
Sbjct: 214 FSPAT 218
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 110 LL*RNLPTYRLG-LNPFCCFLHSFYNKYQIT 21
+L +N+P Y G NP C H+F ++Y+ T
Sbjct: 122 ILIKNIPKYIPGWTNPICIGRHAFGDQYKST 152
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 573 SKRCSLVLVATNQLPMQQNRPLSPYTRDWVQNLHKWT 683
S+ LV A+ + P+Q+N+PL P ++ NL K T
Sbjct: 474 SQVLQLVFSASEKFPIQENQPL-PEQLMFLSNLEKQT 509
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 464 PNDNIDESEKNLKKARLIRFGSTGLTQLVTSEAPSNKQTVFSR---LGSNESVTNATKPS 634
PN EK ++ ST TQ V + APSN T + + +N A +
Sbjct: 90 PNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNV 149
Query: 635 AKPIYARLGAKSAQVDHVI 691
A +G + ++V+ +
Sbjct: 150 AVENMVEMGYERSEVERAM 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,157
Number of Sequences: 5004
Number of extensions: 61467
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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