Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2340
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1348 + 32807308-32807874                                         40   0.002
06_01_0553 + 3942907-3943617                                           37   0.014
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    30   2.2  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   2.9  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    29   5.0  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   6.6  
08_01_0070 + 490655-493165                                             28   8.7  

>04_04_1348 + 32807308-32807874
          Length = 188

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 89  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 268
           W ++ + A +   VA  YAL F+ N +++D L   + E+L  MG++     + IL+ +++
Sbjct: 5   WYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILKLARR 64

Query: 269 VHENAA 286
               AA
Sbjct: 65  SRRRAA 70


>06_01_0553 + 3942907-3943617
          Length = 236

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +2

Query: 89  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 268
           W ++   AG+  DVA  YA  F  N + +D L  L+   L  MG       + I +H  +
Sbjct: 3   WYAWLCRAGLHPDVAFEYARLFARNELAADDLRHLDHGLLATMG-------VPIAKHRLE 55

Query: 269 VHENAARDKVLSNTSVNKVPVAAITGRST 355
           + + A R+   S++S + +    +  R+T
Sbjct: 56  ILKLARRESPPSSSSSSSLAAVRLPWRAT 84


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 494 NLKKARLIRFGSTGLTQLVTSEAPSNKQ-TVFSRLGSNESVTNATKPSAKPIYAR 655
           N +  R+    S+G+ Q+      S    +V SR  S  SVTN  KP+ +P  AR
Sbjct: 183 NCRAHRIKVPNSSGIAQIQRIPKKSEPSPSVVSRSRSTSSVTNVPKPTTRPATAR 237


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 97  FLHNSWYTIRCGCYICTYIYREQDPE*YAVGSE*GVPQRHGDNTNGRCYC 246
           +LH+ +  I+ G Y   +IY  QD + ++  SE G   R    T GRC C
Sbjct: 151 YLHSIYRKIKEGRYTDLFIYGYQDADKFS-SSEFGALFREEAATIGRCPC 199


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 612  TDSLLPRRENTVCLLDGASL-VTSWVSPVDP 523
            TD+LLP  +  V L +G +  +TSW SP DP
Sbjct: 984  TDTLLPDMKLGVDLKNGITRNITSWRSPTDP 1014


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 323 VPVAAITGRSTLPQPSSPASRILEHYTRN 409
           V ++  T R + P PS   SR+ EH T N
Sbjct: 836 VTISQETNRDSQPSPSGMMSRVTEHETNN 864


>08_01_0070 + 490655-493165
          Length = 836

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 585 NTVCLLDGASLVTSWVSPVDPKRMRRA 505
           NT C+LDG  +V  W   V P+  RRA
Sbjct: 255 NTTCILDGDDMVRCWGVEV-PEEYRRA 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,659,165
Number of Sequences: 37544
Number of extensions: 401434
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)