Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2340
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical pr...    73   2e-13
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   7.9  

>Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical
           protein F53F8.5 protein.
          Length = 368

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
 Frame = +2

Query: 89  WVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYLRDMGITRMGDVIAILRHSKQ 268
           W  FF  AGIPS++A  YA +F  NRI  +ML +L+K  L ++G++ +GD + ILR  K 
Sbjct: 4   WTQFFVRAGIPSEIAKKYAKSFATNRITKEMLPELDKSTLSELGVSAIGDQLCILRRIKA 63

Query: 269 VHENAARDKVLSNTSVNKVPVAAITGRSTLPQPSSPASRILEHYTRNXXXXXXXXXXXLK 448
                 R+   +     +   AA   R T P     +S     + R            +K
Sbjct: 64  AKSAIEREAEEAIQEEPQSKPAANKARITAPGALLASSSSSSEHRRGKPPPDRHEIYHVK 123

Query: 449 RKAVQPNDNIDESEKNLKKARLIR------FGSTGLTQLVTSEAPSNKQTVFSRLGSNES 610
                P+ N   + + L+KA ++R       G+TG+ Q   S +P +K ++ +R+   ++
Sbjct: 124 ----MPDGNTHRTRQILQKAEVMRQQGLAVRGTTGVRQGGRSVSPIDKSSLAARMKRKDA 179

Query: 611 --VTNAT 625
             VT++T
Sbjct: 180 PEVTSST 186


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +2

Query: 38   YKMNVKNNKMDSNLTGMWVSFFTTAGIPSDVAATYALTFTENRIQSDMLLDLNKEYL-RD 214
            Y+M  + +  D+   GM +     A +   +  +Y    T + ++S M +   K Y   D
Sbjct: 1493 YEMEAQGSNHDNAELGM-IKPDQLASLNQALTDSYTTRDTNSILRSRMSVSYLKGYTYED 1551

Query: 215  MGITRMGDVIAILRHSKQVHENAARDKVLSNTSVN 319
            + I R      I     Q   NA  DK+  NTSVN
Sbjct: 1552 ILIVRFRPESEIYWPISQDSRNAMIDKLSRNTSVN 1586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,451
Number of Sequences: 27780
Number of extensions: 354936
Number of successful extensions: 925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)