Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2339
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   2.0  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    27   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.6  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   6.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.1  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 646 FGYWPSF*FLTPLA*KLAGKTTIYPRIFHS 557
           FGYWP+F F   L   L  K   YP+++ S
Sbjct: 473 FGYWPAFSFYDELLKLLRNK---YPKVYSS 499


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +1

Query: 406 HVQLGLMHLKKLFAEYTHPQQPLTDAEKDD-KLYNMLPLFCKVIGTSPSSEMNEKFWDIL 582
           +V+ GL H+  L  E    +  L  ++ D  +L   LP  CK +G   +   N+     +
Sbjct: 131 NVKYGLNHVVALI-EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTV 189

Query: 583 SFCQQVSKLMVSEIRKRASNQSTEAASCAIAKF 681
              +  + L V+E+R+   N+     S   A F
Sbjct: 190 IHQKTAAVLAVTEVREEDKNELASIVSAVDANF 222


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 550  LMDWCQSPYKIEAAYCKVYHLFQRLLVVVE 461
            L+ W Q P K+  ++  + HLFQ+ + + E
Sbjct: 2751 LIKWHQLPEKVNQSHYSLLHLFQQFVELQE 2780


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 439 LFAEYTHPQQPLTDAEKDDKLYNMLP 516
           LF+ Y H  Q   D      LYNM+P
Sbjct: 148 LFSSYPHAAQARVDPSISKDLYNMVP 173


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 638 LALFLISDTISLETCWQNDNISQNFSFISL 549
           +++F +S T SLETC ++ +    + F S+
Sbjct: 1   MSIFRLSRTFSLETCLKSSSFKIRWRFFSV 30


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 208 FYWHNNYSQYIGSCLKWKSV 267
           F+W NN+S ++ SCL + SV
Sbjct: 94  FFWRNNHSVFV-SCLIYVSV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,807
Number of Sequences: 5004
Number of extensions: 50834
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)