Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2337
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   3.8  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           24   5.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   5.0  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   6.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.7  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    23   8.7  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 55  QTNDGVQKKIYNSLMNIIDKQCLWDPKH 138
           Q+++ V  ++Y+S++N++ +  L  P H
Sbjct: 127 QSHEPVSVQMYSSMLNLLGRPTLESPTH 154


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 98  INELYIFFCTPSLVCHFQHLKRDRTNNTHVR 6
           +N+L    C   + C+ +HL+  R   THV+
Sbjct: 55  LNDLTKQVCVELMQCNKKHLEASRYFQTHVK 85


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 215 KKLLVKYDHFEILTT-MSC 268
           ++LL  Y+HF+I TT +SC
Sbjct: 848 EELLTVYEHFDIATTLLSC 866


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 90  IVYFFLYSIVGLPFS 46
           + Y FLY+  G+PFS
Sbjct: 169 VTYGFLYACTGIPFS 183


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 62  LVCHFQHLKRDRTNNTHVR 6
           L CHF H+  D  NN  V+
Sbjct: 63  LECHFNHIDWDLGNNFKVK 81


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 189 HNYFVGRISGIPIFIL*VFRVPQTLLVDDIH**IVYFFLYSIVGLPF 49
           ++ F+     IP   +  FR+P+T+ +  I+  +  F  +S +  PF
Sbjct: 290 NSVFLPHTYTIPAVFVDTFRLPETITLAPIYFHLAIFATFSSLIAPF 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,292
Number of Sequences: 5004
Number of extensions: 28840
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)