Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2337
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 27 3.0
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 27 3.0
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 26 5.3
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 26 5.3
Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z68014-13|CAA92028.2| 582|Caenorhabditis elegans Hypothetical p... 26 7.0
U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical pr... 26 7.0
U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical pr... 26 7.0
AY887916-1|AAX34428.1| 582|Caenorhabditis elegans anion transpo... 26 7.0
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 26 7.0
Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 25 9.2
Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical pr... 25 9.2
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 25 9.2
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 25 9.2
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 25 9.2
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 25 9.2
>U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical
protein F25E2.1 protein.
Length = 329
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 149 LYCRCFGSHRHCLSMIFINELYIFFCTPSLVCHFQH 42
LY CFG R + IF++ L + C L+C +H
Sbjct: 143 LYSTCFGGRRSLIFCIFLDFLPV--CILYLICVVEH 176
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 159 CPRCGLQNNYGSHGDAMCQRSC 224
C CG +N G+H C R+C
Sbjct: 24 CKICGAENTRGNHFGVQCCRAC 45
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 159 CPRCGLQNNYGSHGDAMCQRSC 224
C CG +N G+H C R+C
Sbjct: 9 CKICGAENTRGNHFGVQCCRAC 30
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 42 VLKMANQRWSTEKNIQFINEYHRQAVSVG 128
+LK +Q + N+ IN +HRQA+ G
Sbjct: 63 ILKFISQNYKLGDNVIQINAHHRQALKRG 91
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 13 CVLLVRSRFKC*KWQTNDGVQKKIYNSLMNIID 111
CV L RS +C +T KI NSL+NI D
Sbjct: 696 CVGLFRSGDQCSALETESNPFFKIINSLLNIQD 728
>Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical
protein F26A3.6 protein.
Length = 487
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 103 YSLMNCIFFSVLHRWFAIFNT*SATELT 20
+ L +C+ VLH + IF T S TE T
Sbjct: 14 FLLCSCVALFVLHSLYFIFRTASQTEKT 41
>Z68014-13|CAA92028.2| 582|Caenorhabditis elegans Hypothetical
protein W04G3.6d protein.
Length = 582
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 231 FTNNFFDTLHLHGFHNYFVGRISGIPIFIL*VFRVPQTLLVDD 103
F FF T+ L F+G I + + IL + R TLL DD
Sbjct: 420 FAITFFATVCLDVVPGLFIGTIFALLLSILRIQRSSPTLLDDD 462
>U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical
protein F08C6.2b protein.
Length = 354
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 246 SK*SYFTNNFFDTLHLHGFHNYFVGRISGI 157
SK +F DT H G N F GR+ GI
Sbjct: 258 SKSDDIIRDFIDTFHKDGGLNAFGGRLKGI 287
>U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical
protein F08C6.2a protein.
Length = 362
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 246 SK*SYFTNNFFDTLHLHGFHNYFVGRISGI 157
SK +F DT H G N F GR+ GI
Sbjct: 266 SKSDDIIRDFIDTFHKDGGLNAFGGRLKGI 295
>AY887916-1|AAX34428.1| 582|Caenorhabditis elegans anion
transporter SULP-7d protein.
Length = 582
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 231 FTNNFFDTLHLHGFHNYFVGRISGIPIFIL*VFRVPQTLLVDD 103
F FF T+ L F+G I + + IL + R TLL DD
Sbjct: 420 FAITFFATVCLDVVPGLFIGTIFALLLSILRIQRSSPTLLDDD 462
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 139 LQYKNRDARDAAYKIIMEAMEMQCVKEVVGKIRSLRNTYNNELLKAKKSNTTGMETND 312
+ YK R+ +AA K ++ E + K + + +L+N E A K+ + T++
Sbjct: 157 ITYKTREEAEAAQKAEVKFGETELTKMMQDEYWTLKNKETKEARAANKAAKSAKNTSE 214
>Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 159 CPRCGLQNNYGSHGDAMCQRSC 224
C CG +N G+H C R+C
Sbjct: 4 CLICGAKNTRGNHFGVRCCRAC 25
>Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 159 CPRCGLQNNYGSHGDAMCQRSC 224
C CG +N G+H C R+C
Sbjct: 4 CLICGAKNTRGNHFGVRCCRAC 25
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 69 STEKNIQFINEYHRQA 116
++EK Q INE+HRQA
Sbjct: 184 NSEKIAQIINEFHRQA 199
>Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical
protein T12A7.6 protein.
Length = 402
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 70 VQKKIYNSLMNIIDKQCLWDPKHLQ 144
+QK + ++ N++ + WD KHL+
Sbjct: 76 IQKSLRTAMENVLAEAKRWDAKHLE 100
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 82 IYNSLMNIIDKQCLWDPKH---LQYKNRDARDAAYKIIMEAMEMQC 210
IY ++ ++K C+W PK L+ +N + D I ++ C
Sbjct: 164 IYEHWVDRLEKMCIWKPKEFHKLKDENGEELDDVCNICLDGDTSNC 209
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 82 IYNSLMNIIDKQCLWDPKH---LQYKNRDARDAAYKIIMEAMEMQC 210
IY ++ ++K C+W PK L+ +N + D I ++ C
Sbjct: 164 IYEHWVDRLEKMCIWKPKEFHKLKDENGEELDDVCNICLDGDTSNC 209
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 155 LFLYCRCFGSHRH 117
LFLYC C G RH
Sbjct: 99 LFLYCLCLGGLRH 111
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 155 LFLYCRCFGSHRH 117
LFLYC C G RH
Sbjct: 99 LFLYCLCLGGLRH 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,081,154
Number of Sequences: 27780
Number of extensions: 166063
Number of successful extensions: 413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -