Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2337
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.69 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   0.69 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   0.91 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   8.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   8.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -3

Query: 149 LYCRCFGSHRHCLSMIFINELYIFFCTPSLVCHFQHLKRDR 27
           ++ RC G  +     +    L I  C P  VC   +L+  +
Sbjct: 42  IFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKK 82


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -3

Query: 149 LYCRCFGSHRHCLSMIFINELYIFFCTPSLVCHFQHLKRDR 27
           ++ RC G  +     +    L I  C P  VC   +L+  +
Sbjct: 42  IFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKK 82


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 229 KIRSLRNTYNNELLKAKKS 285
           K+RS+ N   N +LKAK S
Sbjct: 360 KVRSMFNDSGNPILKAKPS 378


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 60  QRWSTEKNIQFINEYHRQAVSVGPETP 140
           Q WS       ++  +    SVGP++P
Sbjct: 21  QHWSRGNTWLSLDNSNMSMSSVGPQSP 47


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 60  QRWSTEKNIQFINEYHRQAVSVGPETP 140
           Q WS       ++  +    SVGP++P
Sbjct: 21  QHWSRGNTWLSLDNSNMSMSSVGPQSP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,891
Number of Sequences: 438
Number of extensions: 2493
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)