Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2334
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    28   0.80 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   7.5  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   7.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.9  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   9.9  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 527 VEQVFESASIGIALLHFPAEKQFLSRCEFDQPQSRRRVLTCLRASVITH 381
           +E +F S    ++L      ++F     +++  S  RV+ C+R S++TH
Sbjct: 240 LESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTH 288


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -3

Query: 411 YLSTCFSNHSLCHSKLMKTKDMQLFENPF 325
           Y+S CF     C  K     D+  F+  F
Sbjct: 203 YVSICFFTFEFCKQKFFSNADLTAFQKLF 231


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 261 WILFLNVNAIFSNTNKRNDNFKTDFRITACPLFSLA 368
           W+  LNV  +F+  N   D F T   +  CP+ S A
Sbjct: 85  WVA-LNVYELFTYLNHFYDVFATFCTVKTCPVMSAA 119


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 244 CDSQKICKAQVKVSCE 197
           CD +  CKA ++VSCE
Sbjct: 752 CDERIPCKAPLEVSCE 767


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 503 SIGIALLHFPAEKQFLSRCEFDQPQSR 423
           S G+AL++ P E + +   + D P+S+
Sbjct: 411 STGVALVNLPEELENMKYLQIDTPESK 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,694
Number of Sequences: 5004
Number of extensions: 37364
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)