Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2334
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114...    29   2.5  
09_03_0033 - 11745720-11745876,11746407-11746555                       28   5.8  

>03_05_0110 +
           20910084-20910187,20910255-20910303,20911334-20911442,
           20911597-20911690,20912253-20912386,20912519-20912682,
           20912818-20912889
          Length = 241

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 203 AHFNLCFAYFLTVTINLGLVD 265
           AH N CF +F+  T   GL+D
Sbjct: 204 AHLNTCFKHFILFTTEFGLID 224


>09_03_0033 - 11745720-11745876,11746407-11746555
          Length = 101

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 20  WKKNFSNRSSSFGAYSKQTNKQIFPLYNISIDKIFYLCN 136
           W+K +    + FG Y KQ  +Q  P  + SI  +  LC+
Sbjct: 63  WRKEYMEAWNQFGLYVKQQPQQPCPTCSSSIRTLRGLCS 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,613
Number of Sequences: 37544
Number of extensions: 192336
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)