Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2333
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 2.4
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 4.2
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 4.2
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 7.3
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 7.3
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.3
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 24 9.6
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 24 9.6
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 24 9.6
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 24 9.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 74 PKPASGVTRSPPPSLA 27
PKPA+GV PPPS A
Sbjct: 1182 PKPAAGVPPVPPPSEA 1197
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 74 PKPASGVTRSPPPSLA 27
PKP+ GV PPPS A
Sbjct: 1201 PKPSVGVPPVPPPSTA 1216
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 164 TYGRARSKSSNSPADETHSTQSAR 235
TYG+ RS + NSP T S S R
Sbjct: 185 TYGKLRSVTINSPTSATLSFSSLR 208
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 4.2
Identities = 18/76 (23%), Positives = 29/76 (38%)
Frame = +1
Query: 10 RSNHPSASEGGGERVTPDAGFGPRRSISPAVTQRERRSDAPVTIAQRPVIRHLRTRPVEV 189
R N +AS T ++ RS+S ++ R D + Q + L T
Sbjct: 442 RKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAIDFLQEVDVEALFTPATSS 501
Query: 190 QQLPRRRDPQHAECAL 237
+LP+ +H C L
Sbjct: 502 LKLPKSHWKRHNRCLL 517
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 441 EWDISDSINVLIQNILSIKNKVYTFANNNSI 349
E D+ D++ V I+N+ ++KN Y + N+I
Sbjct: 86 ELDLYDNLIVRIENLDNVKNLTYLDLSFNNI 116
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 128 ASLLLSRCVTAGEIERRGPKPASGVTRSPPPSLAEGWLL 12
A+ +L + E RR P+ +PPP +E W L
Sbjct: 350 AARILKQMFHVAERHRRNRVPSVQEVLNPPPRESEAWRL 388
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 83 RRGPKPASGVTRSPPPSLAE 24
RRGP + T+ PP+L+E
Sbjct: 258 RRGPSETASKTQQAPPTLSE 277
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 300 NKGFNACY*AGRIKTRS*TSLQRALCVLW 214
+K ++CY GRI TRS L+ L ++W
Sbjct: 58 SKFHDSCYPDGRISTRS--KLRWPLLIIW 84
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 300 NKGFNACY*AGRIKTRS*TSLQRALCVLW 214
+K ++CY GRI TRS L+ L ++W
Sbjct: 78 SKFHDSCYPDGRISTRS--KLRWPLLIIW 104
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 300 NKGFNACY*AGRIKTRS*TSLQRALCVLW 214
+K ++CY GRI TRS L+ L ++W
Sbjct: 58 SKFHDSCYPDGRISTRS--KLRWPLLIIW 84
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 300 NKGFNACY*AGRIKTRS*TSLQRALCVLW 214
+K ++CY GRI TRS L+ L ++W
Sbjct: 58 SKFHDSCYPDGRISTRS--KLRWPLLIIW 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,349
Number of Sequences: 5004
Number of extensions: 38521
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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