Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2333
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    31   0.40 
AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical ...    30   0.92 
AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical ...    30   0.92 
U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81532-4|CAE17815.1|  136|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    28   3.7  
Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    27   6.5  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...    27   8.6  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   8.6  

>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +1

Query: 31  SEGGGERVTPDAGFGPRRSISPAVTQRERRSDAPVTIAQRPVIRHLRTRPVEVQQLPRRR 210
           +E   E++  DA     R+I  +V      + AP+T +Q P+   L   P+   QLP+  
Sbjct: 436 AEAAAEKMRYDAFAQLSRTILGSVASINSLN-APLTSSQHPMTSRLPPLPMAPLQLPKLP 494

Query: 211 D---PQ-HAECALQARSRPGFNTP 270
           +   PQ   +    A SRP FN P
Sbjct: 495 EIPKPQAQKQFTFPATSRPRFNFP 518


>AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 99  RNTTREKERCPCDYCPEARDPPPTDAPG 182
           RN       C C+ CP+   PPP   PG
Sbjct: 167 RNCIGGPPHCECENCPKPPPPPPIPPPG 194


>AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.3 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 99  RNTTREKERCPCDYCPEARDPPPTDAPG 182
           RN       C C+ CP+   PPP   PG
Sbjct: 167 RNCIGGPPHCECENCPKPPPPPPIPPPG 194


>U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical
           protein ZK546.7 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 99  RNTTREKERCPCDYCPEARDPPPTDAPG 182
           RN       C C+ CP+   PPP   PG
Sbjct: 132 RNCVGGPPYCECENCPKLPPPPPIPPPG 159


>Z81532-4|CAE17815.1|  136|Caenorhabditis elegans Hypothetical
           protein F36F2.7 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 61  DAGFGPRRSISPAVTQRERRSDAPVTIAQ-RPVIRHLRTRPVEVQQLPRR 207
           + G  P+RS    +      S  P   A  +P +R + T PVEV+   R+
Sbjct: 52  ETGISPKRSTIRVIKSLPNTSLPPTPTAYTKPPVRRVHTNPVEVESPSRQ 101


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 173 VRRWRITGLWAIVTGASLLLSRCVTAGEIERRGPKPASGVTRSPPPSLAE 24
           +R +++T L+  +   SL   R        RR P P  G    PPP   E
Sbjct: 1   MRTFQLTLLFTALAVTSLAAPRFSVGETASRRPPPPPKGTGTPPPPPTGE 50


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 85  SISPAVTQRERR-SDAPVTIAQRPVIRHLRTRPVEVQQLPRRRD 213
           S++ A   R R  SD P + A RPV R   T+PVE     ++ D
Sbjct: 513 SVNQASMARNREGSDGPSSSAARPVGRPPTTQPVETAVEKKKND 556


>Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical
           protein W04D2.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +1

Query: 58  PDAGFGPRRSISPAVTQRERRSDAPVTIAQRPVIRHLRTRPVEVQQLPRRRDPQHA-ECA 234
           P+A    RRS S + +  E  SD+  + +     R     P   +   RRR   HA E +
Sbjct: 89  PEASKRSRRSRSSSNSSSE--SDSSSSRSSSYSSRSRSRTPQRSRTSKRRRSNSHASEDS 146

Query: 235 LQARSRPGFNTPCLIACIESLIRLKRW 315
             AR +  F    L      L RLKRW
Sbjct: 147 DDAREKRAFKQMMLDKKQAYLARLKRW 173


>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 446 ILNGTSQIL*MF*YRIF-CLLKIKCIRSRITIPFIYLLCI 330
           +L+G  ++L +  +R    ++K+K    R+  PFIY+LC+
Sbjct: 102 LLSGQIEVLTICFFRKHQAIMKLKQSTDRLPYPFIYVLCM 141


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 89  IERRGPKPASGVTRSPP 39
           I+R G KP SGV  SPP
Sbjct: 862 IKRTGVKPGSGVVTSPP 878


>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 145 QRPVIRHLRTRPVEVQQLPRRRDPQHAECALQARSRPGFNTPCLIACIESLIRLKRWGGA 324
           Q P+I  +R RP +++     +D Q     L+  SRP  N   L+    +L   + W   
Sbjct: 75  QYPIIYDIRARPNQIRSPTGSKDLQMVNIGLRVLSRP--NPEHLVHIYRTL--GQNWEER 130

Query: 325 IL--IHNK*INGIVIR-ERIHFIFNRQNI 402
           +L  I N+ + G+V +      I  RQ +
Sbjct: 131 VLPSICNEVLKGVVAKFNASQLITQRQQV 159


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 89  IERRGPKPASGVTRSPP 39
           I+R G KP SGV  SPP
Sbjct: 862 IKRTGVKPGSGVVTSPP 878


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,241
Number of Sequences: 27780
Number of extensions: 226659
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)