Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2333
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 129 GIAPSLSLCYGGRD 88
           G+A  ++ CYGGR+
Sbjct: 258 GVADLIATCYGGRN 271


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 135 DYCPEARDPPPTDAPG 182
           +Y P++  PPP D  G
Sbjct: 658 EYPPDSDPPPPDDISG 673


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 59  GVTRSPPPSLAEGWLLL 9
           G  R PP SL + WL +
Sbjct: 341 GYGRFPPQSLTDMWLTM 357


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 59  GVTRSPPPSLAEGWLLL 9
           G  R PP SL + WL +
Sbjct: 309 GYGRFPPQSLTDMWLTM 325


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 105 TTREKERCPCDYCPEAR 155
           TT+EK + P ++ PE +
Sbjct: 140 TTKEKAKFPQEFFPECK 156


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 215 GSRLRGSCWTSTGRVRRWRITGLWAIVTGA 126
           GS+    C TS     RW  T +    TGA
Sbjct: 764 GSQGLLQCATSNYSTTRWPATSVITTTTGA 793


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,731
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)