Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2332
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.50
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.87
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.2
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 28 1.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.0
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 4.7
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 26 6.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.1
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 8.1
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 330 CEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVELEQCSNLKHLKLG 485
CE ++ E F +C AQ + FC+DG+++ ++L+ SNL+ +K G
Sbjct: 202 CEKSDKAIEKTF-LC-AQLFK-TFCEDGVLQTFQPGFIQLDIASNLQEIKKG 250
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.87
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +3
Query: 90 CRANERFLECGCRKTCRNPAPNCRAMCITGCFCEEGQVNNDNGVCVNLADCPQAASAYKL 269
C ANE ++ C + P C +C C Q N C + Q A +
Sbjct: 511 CTANE--VQVTCEQLQNGFIPTCERLCTILLSCGRHQCNKK---CCSGYSKAQTRLARRP 565
Query: 270 QTTEPRFDGGKCPQNEEYKFCEPCNR--TCENPFPVCPAQCARG 395
+ + R+ EE+ PCN+ +C N F C C RG
Sbjct: 566 KGAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHF--CQHMCHRG 607
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Frame = +3
Query: 126 RKTCRNPAPNCRAMC--ITGC--FCEEGQVNNDNGVCVNLADCPQAASAYKLQTTEPRFD 293
RK+C +P P C +C + C C+ G C P +A ++Q T +
Sbjct: 465 RKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQ 524
Query: 294 GGKCPQNEE----YKFC--EPCNRTCENPFPVCPAQCAR 392
G P E C CN+ C + + + AR
Sbjct: 525 NGFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLAR 563
Score = 26.2 bits (55), Expect = 4.7
Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 12/169 (7%)
Frame = +3
Query: 111 LECGCRKT-------CRNPAPNCRAMCITGCFCEEGQV-NNDNGVCVNLADCPQAASAYK 266
L C C +T C P P+C +C+ C QV +N + CP +
Sbjct: 620 LPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKK-R 678
Query: 267 LQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVE 446
+ + C E + E CN+ C C C+ ++ + +
Sbjct: 679 CLCGKHILENQPC-YRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMY 737
Query: 447 LEQ-CSNLKHLKLGENYKQPIPSRVNC-GPYQVYKKCGTCDK--TCSKS 581
E C + H P R+ C P +V +CG K TC S
Sbjct: 738 CEHVCQSPCHA------GHPCDERIPCKAPLEVSCECGRIRKKVTCDAS 780
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 247 KPLPHTSCRQQSHASMEGNALKT-RSTNSASPVTGLARIRSRCVQRS---APEDVS 402
KP+P T + SHA + N T R+ S ++ SR V++S AP D S
Sbjct: 129 KPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPS 184
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 409 SLQKHPRAHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSVVCSLYAEAA*GQSAK 230
S Q +C + GF V++QGS + Y F F ++ VCS+ + Q A+
Sbjct: 493 SAQGKQLRYCGNNAAEGFDDVVIQGSLSDY-KFACFFTKGEKVVGVCSIMKDPVVSQCAR 551
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 487 SPSLRCFKFEHCSNSTHFPSLSLTRPSLQKHPRAHCAGHTGN 362
S R E CS+ + P L+L P + P AGHT +
Sbjct: 270 SEHARSVASETCSSDPNNPKLNLKAPVFSEAPIREYAGHTAD 311
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +1
Query: 271 RQQSHASMEGNA-LKTRSTNSASPVTGLARIRSRCVQR------SAPEDVSVKTVW*GTK 429
R++S ++ G++ TRST S +P+T L +R + R P+++ + W G K
Sbjct: 620 RKKSKYNLPGSSGFMTRSTKSTNPMTPLNWLRGISMGRLGNADWEVPQNLGEELSWIGQK 679
Query: 430 TENV 441
NV
Sbjct: 680 YSNV 683
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 225 VNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQ 383
++LAD Y + T G P+N +Y P N++ + P+CP +
Sbjct: 123 IDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS-SHYHPMCPIE 174
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.1
Identities = 27/117 (23%), Positives = 47/117 (40%)
Frame = +1
Query: 259 HTSCRQQSHASMEGNALKTRSTNSASPVTGLARIRSRCVQRSAPEDVSVKTVW*GTKTEN 438
H+ S +S N L+ ++ + V+ A ++ + S D + T E+
Sbjct: 240 HSPSPSASSSSSSENLLQDKA-EAEEKVSADASVQDIAEKESLDADKELAT----NDQED 294
Query: 439 VWNWNNAQT*NILSLEKTTNSQSLPASTAVPIKCTRSVAPVTKPAVNPNPCVQPNLS 609
N A+T ++ N QS T P T +V +TKP + NP ++S
Sbjct: 295 DEEENQAETQKDGAISNNENMQS-EVQTTNPSASTSAVTNITKPTLIQNPSTPLSVS 350
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 442 WNWNNAQT*NILSLEKTTNSQSLPASTAVPIKC 540
W NA T + EK + SLP+ PI C
Sbjct: 199 WRLANATTLLLRKAEKDSRGHSLPSVLTQPINC 231
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 451 NNAQT*NILSLEKTTNSQSLPASTAVPIKCTRSVAPVTKPAVNP 582
N AQ N +LEKT+++++ +S+ + S V+ P V+P
Sbjct: 8 NGAQGGNNNALEKTSSNEATSSSSTQVSSLSASGISVSTPRVSP 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,203
Number of Sequences: 5004
Number of extensions: 66322
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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