Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2332
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758...    31   1.2  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    30   1.6  
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311     30   1.6  
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754...    30   2.1  
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     29   2.8  
06_02_0175 - 12624608-12625297                                         28   6.4  
03_01_0587 - 4349150-4350115                                           28   6.4  
12_01_0197 + 1456296-1456668,1456930-1458746                           28   8.5  
04_01_0528 - 6917414-6919849                                           28   8.5  

>12_01_1093 -
           11374087-11374140,11374337-11374438,11375793-11375873,
           11376005-11376343
          Length = 191

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 336 PCNRTCENPFPVCPAQCARGCF-CK--DGLVRDKD 431
           P  R CE+P P C  + A GC  C+  + L+RD D
Sbjct: 40  PSPRHCESPCPACRGRVASGCLACRRWEHLLRDGD 74


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 285 RFDGGKCPQNEEYKFCEPCNR 347
           R+  GK P + EYKF EPC +
Sbjct: 462 RYIAGKVPAHVEYKFLEPCRK 482


>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
          Length = 705

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 147 APNCRAMCITGCFCEEGQVNNDNGVC 224
           A +C+A C++ CFC    ++ ++G C
Sbjct: 363 AADCQAACMSDCFCVAALLDTNDGTC 388



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
 Frame = +3

Query: 228 NLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPV-CPAQCARGCFC 404
           +L D   AA      +      GG+ P         PC           C A C   CFC
Sbjct: 317 DLIDAGDAAGGCTASSGAGECTGGREPTLNVSWADTPCGVLAAGTSAADCQAACMSDCFC 376

Query: 405 KDGLVRDKDGKCVELEQCSNLKHLKLGENY 494
              L+   DG C   +Q   L++ + G  Y
Sbjct: 377 VAALLDTNDGTCT--KQQLPLRYGRAGGGY 404


>02_05_0105 +
           25874155-25874495,25874586-25874615,25875327-25875433,
           25875884-25875918,25876310-25876438,25877103-25877294
          Length = 277

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 244 LKPLPHTSCRQQSHASMEGNALKTRSTNSAS 336
           L+ LPH SC+     S +GN+L T +  +A+
Sbjct: 30  LRRLPHVSCQANRGGSRDGNSLSTSAAAAAA 60


>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 207 NDNGVCVNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENP--FPVCPA 380
           +D+ VC+N +    A SAY    ++  + G   P  +    CE  N  CE+P  +P C  
Sbjct: 258 SDHSVCLNYSS--GAKSAYMCNCSKG-YHGN--PYLQGSNGCEDINE-CEHPESYP-CYG 310

Query: 381 QCAR-----GCFCKDGLV 419
           +C        CFC+DG+V
Sbjct: 311 ECHNKDGGFDCFCRDGVV 328


>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 318 EYKFCEPCNRTCENPFPVCPAQCARGCF 401
           EY  C      C     VCP QC   CF
Sbjct: 189 EYARCTAATGRCRGALLVCPMQCEGPCF 216


>03_01_0587 - 4349150-4350115
          Length = 321

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 496 NSQSLPASTAVPIKCTRSVAPVTKPAVNPNPCVQPNLSER 615
           +S S  A+T  P KC  + A  T  A  PN  V  NL ++
Sbjct: 150 SSSSSTAATPRPRKCRPTTATATPKATTPNVVVVVNLVDK 189


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 156 CRAMCITGCFCEEGQVNNDNGVC 224
           C   CI+ C C+E Q    NG C
Sbjct: 285 CWNTCISDCTCKEFQYQEGNGTC 307


>04_01_0528 - 6917414-6919849
          Length = 811

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 156 CRAMCITGCFCEEGQVNNDNGVC 224
           CR +C+  CFC     N  +  C
Sbjct: 389 CRRLCVIDCFCSVAVFNKPSNTC 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,480,961
Number of Sequences: 37544
Number of extensions: 503205
Number of successful extensions: 1750
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)