Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2332
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    54   1e-09
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    54   1e-09
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.044
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 297 GKCPQNEEYKFCEP-CNRTCEN--PFPVCPAQCARGCFCKDGLVRDKDGKCVELEQC 458
           GKCP NE +  C+  C R C N  P P+C   CA GC C+ G +R+K   CV   +C
Sbjct: 35  GKCPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 90  CRANERFLECG--CRKTCRN--PAPNCRAMCITGCFCEEGQVNNDNGVCVNLADC 242
           C +NE F  C   C++ C N  P P C  +C  GC C  G + N   VCV  + C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 29.9 bits (64), Expect = 0.025
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 587 PVCNQTCQRGCFCQEGYVKSVHGSCV 664
           P+C + C  GC C+ GY+++    CV
Sbjct: 61  PLCIKICAPGCVCRLGYLRNKKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 297 GKCPQNEEYKFCEP-CNRTCEN--PFPVCPAQCARGCFCKDGLVRDKDGKCVELEQC 458
           GKCP NE +  C+  C R C N  P P+C   CA GC C+ G +R+K   CV   +C
Sbjct: 35  GKCPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 90  CRANERFLECG--CRKTCRN--PAPNCRAMCITGCFCEEGQVNNDNGVCVNLADC 242
           C +NE F  C   C++ C N  P P C  +C  GC C  G + N   VCV  + C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 29.9 bits (64), Expect = 0.025
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 587 PVCNQTCQRGCFCQEGYVKSVHGSCV 664
           P+C + C  GC C+ GY+++    CV
Sbjct: 61  PLCIKICAPGCVCRLGYLRNKKKVCV 86


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
 Frame = +3

Query: 87  LCRANER-FLECGCRKTCRNPAPNCRAMCITGCFCEEGQVNNDNGVCVNLADCPQAASAY 263
           LCR     F  C C   C   A +C   C  GC C   +  N N V  +     +     
Sbjct: 736 LCRYEAHCFALCHC---CDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRI 792

Query: 264 KLQTTEPRFDGGKCPQNEEYKF 329
            +  TE   DG    + + + F
Sbjct: 793 PMDATEVYLDGNVLRELQNHVF 814


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +1

Query: 247 KPLPHTSCRQQSHASMEGNALKTRSTNSASPVTGLARIRSRC-VQRSAPEDVSVKTVW*G 423
           K L   + R++   S E      ++ NS       ++ RSR   +R   ++  + +    
Sbjct: 266 KLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSN 325

Query: 424 TKTENVWNWNNAQT*NILSLEKTTNSQSLPASTAVPIKC 540
               N+ N+NN    N          + +P    VPI C
Sbjct: 326 NYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPVPIYC 364


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 388 AHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSV 275
           A+CA HT +  +  ++     LY++F     P K  +V
Sbjct: 422 AYCAAHTDSSGAMKIVNMLNQLYTAFDVLTDPKKNPNV 459


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 357 SRKSCYRARRICTPRFEGIS 298
           SRK   R RR  TPR+  +S
Sbjct: 402 SRKESGRRRRRRTPRYNSVS 421


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 388 AHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSV 275
           A+CA HT +  +  ++     LY++F     P K  +V
Sbjct: 422 AYCAAHTDSSGAVKIVNMLNQLYTAFDVLTDPKKNPNV 459


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 423 DKDGKCVELEQC 458
           D DGK V+L QC
Sbjct: 13  DNDGKMVDLTQC 24


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 481 LEKTTNSQSLPASTAVPIKCTRSVAPVTKPAVNPNPCV 594
           LEK    + LP +  VPI  T  V  VT    N   C+
Sbjct: 19  LEKVRGPKYLPLTLIVPITLTYVVIFVTGFVGNIITCI 56


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 24  SIFICLSLCYIV 59
           S F+C+SL YI+
Sbjct: 400 SAFLCISLVYII 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,326
Number of Sequences: 438
Number of extensions: 5194
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)