Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2329
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   3.2  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   4.3  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    26   4.3  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   7.5  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   9.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.9  

>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 56  LLFFSLNQCYWQRPYRTKRKRKYESYGKEEIWGKTTIIMCR 178
           L++F      WQ    T +K+KYE   +++I    T ++CR
Sbjct: 205 LVYFCRGSLPWQGLKATTKKQKYEKIMEKKI-STPTEVLCR 244


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 277 GYSDSRKMFYLLWNIL 230
           G+S+ +KMFY LW+++
Sbjct: 176 GFSNRKKMFYDLWHLI 191


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +2

Query: 110 RKRKYESYGKEEIWGKTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGV 268
           R +KY+  G +E+  + T  + +IC+     +  F   +   +    +H + V
Sbjct: 177 RSKKYDRLGLDELVMEQTASLWKICSRNGMSVDEFLRFIRMGLESNFQHSNQV 229


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 342 CLEKYVRKTMKCYWGVP-FKQNVMWAS 419
           C +   RK  KC WG+P  ++N ++A+
Sbjct: 154 CEQHINRKCEKCGWGLPLLERNTLYAA 180


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 155 KTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHF 259
           K+ ++  +I  + + EI I  NL H+NI     HF
Sbjct: 122 KSELVQSKIEKQVRREIEIQSNLRHKNILRLYGHF 156


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 242  EEIKHFSGVTISKTDNLSKKMCQSCLDL-LNGWIMF 346
            E++ +F    IS +DN++K  CQ+   L LNG   F
Sbjct: 900  EDLTYFEK-NISGSDNINKNNCQTSATLILNGIFAF 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,304
Number of Sequences: 5004
Number of extensions: 53387
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)