Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2329
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    30   1.4  
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794...    28   4.4  
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    28   5.8  
12_02_0850 + 23651496-23651801,23651893-23651986,23652280-236523...    27   7.6  

>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 369 MKCYWGVPFKQNVMWASTETKTVTSPQKKSITLFKYPHQTFQMITPQ-G*TVQYVISNFG 545
           +K  W   F Q V+  +  T TV     + +  F +P  T   +  Q G +   V+S FG
Sbjct: 210 LKMNWLTQF-QGVVDCARRTVTVYQKPDQPVVFFAHPTPTGSSVLHQLGLSEIPVVSEFG 268

Query: 546 MPP 554
           MPP
Sbjct: 269 MPP 271


>11_06_0227 +
           21475954-21476771,21477215-21479144,21479292-21479426,
           21480287-21480392,21480560-21480576
          Length = 1001

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 140 EEIW--GKTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGVTISK--TDNLSKKM 304
           +++W   K  II C + +  +G   I    ++Q   E  + F GV + +  +D+ SKK+
Sbjct: 279 DDVWETSKWNIIKCALIDSNRGSRVIITTRIYQVANEAAEEFGGVYMMEPLSDDNSKKL 337


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 119 KYESYGKEEIWGKTTIIMCRICNE 190
           K +  GK+E++G+  ++M R CN+
Sbjct: 172 KQDVLGKQELFGRGKLVMLRTCNQ 195


>12_02_0850 +
           23651496-23651801,23651893-23651986,23652280-23652398,
           23652456-23652578,23652919-23652978,23653473-23653523
          Length = 250

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 422 C*SPHHILFKWNPPVTFHCF 363
           C +PH I++K   P TF CF
Sbjct: 93  CLTPHAIVYKVTRPATFPCF 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,706
Number of Sequences: 37544
Number of extensions: 317269
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)