Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2329
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical...    30   1.3  
Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
           protein C27C12.6 protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 107 KRKRKYESYGKEEIWGKTTIIMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGVTISKTD 286
           KRK+  E+Y     +    ++M   C  EK  + +     H N+ + I+HF+ V   K  
Sbjct: 131 KRKKVEETYELSS-FSPIELLMTLFCEHEKHVLELVLEACHGNVLQAIEHFANVRRVKNI 189

Query: 287 NLSK 298
           N  K
Sbjct: 190 NQMK 193


>AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical
           protein Y41D4B.1 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 56  LLFFSLNQCYWQRPYRTKRKRKYESYGKEEIWGKTTIIMCRICNEEKGEIPIFDNLVHQN 235
           L F + N   ++   RT ++  Y+ +GK++ W + TI   +  N    + P  D L   N
Sbjct: 307 LHFLTANSSLFETAKRTLQQYYYQEHGKQQGWAQ-TIFSGKSANCRNCKFPPIDKLPELN 365

Query: 236 I 238
           I
Sbjct: 366 I 366


>Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 447 QKKSITLFKYPHQTF 491
           Q  ++T FKYPHQTF
Sbjct: 221 QPPTLTSFKYPHQTF 235


>Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 447 QKKSITLFKYPHQTF 491
           Q  ++T FKYPHQTF
Sbjct: 221 QPPTLTSFKYPHQTF 235


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +2

Query: 167 IMCRICNEEKGEIPIFDNLVHQNIPEEIKHFSGVTISKTDNLSKKMCQSCLDLLNGWIMF 346
           I   + N E   + IFDN     I +       +T S  D++SK + Q      NG ++ 
Sbjct: 367 IEINLINVENVSVSIFDNA---GIKKATYEPIDLTTSYQDHVSK-VIQKVEKHRNG-LVE 421

Query: 347 REICQKNNEMLLGGSI 394
           RE+C  NN   LG S+
Sbjct: 422 RELCSVNNRWQLGFSL 437


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 200 EIPIFDNLVHQNIPEEIKHFSGVTISKTDNLSKKMCQSCLDLLNGWIMFREICQKNNEML 379
           EI I DN  +QN+   I   + V IS ++NL +    +C    N   M +      N+ML
Sbjct: 215 EIFITDNEFNQNLANSIITTNSVNISISENLFQDKRSTCEITYNSPAMPKIEDLTQNKML 274

Query: 380 LGGS 391
            G +
Sbjct: 275 SGNT 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,045
Number of Sequences: 27780
Number of extensions: 299274
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)