Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2327
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0268 + 22540149-22540204,22541370-22541751                       30   2.3  
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611...    30   2.3  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    29   3.0  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   9.1  

>03_05_0268 + 22540149-22540204,22541370-22541751
          Length = 145

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 173 RDSEYTQSDRFFIALLDRRAYGPLDGEWLPSPMNFSNTRGRAK 301
           RD+  T + RFF   ++++A GPLD    P P      R R++
Sbjct: 45  RDAITTTTIRFFPLRIEKKAKGPLDPPTTPRPPRRRRKRRRSR 87


>03_02_0961 +
           12759701-12760054,12760294-12760420,12760719-12761167,
           12761369-12761590,12761672-12761980,12762092-12762430,
           12762504-12762584,12762661-12762756,12762846-12763220,
           12763400-12763531,12763962-12764132
          Length = 884

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 282 LLKFMGDGNHSPSSGPYA-RLSKRAIKKRSDCVY 184
           +LK +GD N  P+SG ++    +RA+KK  +  Y
Sbjct: 466 ILKILGDDNEIPTSGVFSLPFMERAMKKHEEATY 499


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 246 SSGPYARLSKRAIKKRSDCVYSLSLHEVSNYHNRV 142
           ++ P+A L+ RA+ K   C+ S+ L+++ N  N+V
Sbjct: 296 NAAPFAALALRAMAKHFKCLKSMILNQLRNTSNKV 330


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -2

Query: 474  DLKVLKSMKSYVLGFSNKWIFLSTFISITMTTNH 373
            D+ ++  M+S+V   S+KW+  ++ + I +T+NH
Sbjct: 1997 DVDIINYMESFVKS-SDKWMDSTSMVEIPITSNH 2029


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,305
Number of Sequences: 37544
Number of extensions: 314278
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)