Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2326
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    28   7.2  
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    28   7.2  
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366...    28   9.5  
02_01_0408 - 2972240-2975380                                           28   9.5  
02_01_0405 - 2952434-2955583                                           28   9.5  
01_06_1313 - 36212524-36213669                                         28   9.5  
01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943     28   9.5  

>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 646 GRIGYRGPPLEPPGRITKASA*FLSRRARW 557
           GRI +  P L  PG + +  A   SRR+ W
Sbjct: 346 GRIAHASPDLSLPGELVEGRAGMHSRRSSW 375


>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 36  IQQVFTVHEPDMPWHLHSCFI 98
           ++QV T+   D+P+HL +CF+
Sbjct: 461 VKQVLTLSYNDLPYHLKACFL 481


>10_08_0485 +
           18235597-18236256,18236353-18236400,18236522-18236644,
           18237062-18237211,18237702-18237873,18237965-18238025,
           18238129-18238237
          Length = 440

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 625 PPLEPPGRITKASA*FLSRRARWV 554
           PPL PPG  T+ +A  L+RR R V
Sbjct: 15  PPLPPPGCRTRRAAPVLARRGRGV 38


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 633 TGAPPSSHPDASLKRVLNSCHDGRAGCPPDE-YSRHSIDCLT 511
           +G  P    + S+ RVL + ++  +G  PDE ++  S+DCL+
Sbjct: 217 SGGVPPELGNCSMLRVLKAGNNNLSGTLPDELFNATSLDCLS 258


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 633 TGAPPSSHPDASLKRVLNSCHDGRAGCPPDE-YSRHSIDCLT 511
           +G+ P      S  RVL + H+  +G  PDE ++  S++CL+
Sbjct: 217 SGSIPPGFGSCSRLRVLKAGHNNLSGTIPDEIFNATSLECLS 258


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 552 PPDEYSRHSIDCLTHIWTLDRSVAAYL 472
           PP    RHS + L H+WT+   ++AYL
Sbjct: 133 PPLLRRRHSGEPLAHLWTIALLMSAYL 159


>01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943
          Length = 363

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 567 GRAGCPPDEYSRHSIDCLTHIWTLDRSVAAY 475
           G+ GC P+E +R+S D  T +  +D ++  +
Sbjct: 221 GQVGCSPNELARYSADGATCVARIDSAIQIF 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,529,626
Number of Sequences: 37544
Number of extensions: 525300
Number of successful extensions: 1311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)