Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2323
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 212 3e-55
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 184 6e-47
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 63 2e-10
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 56 2e-08
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 43 3e-04
07_01_0568 - 4216898-4216911,4216997-4217024,4217265-4217335,421... 31 0.69
09_02_0384 - 8294914-8297817 30 1.6
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 30 2.1
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 29 3.7
12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746 29 4.8
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164... 28 8.5
08_02_1188 + 25053594-25054941,25055025-25055650 28 8.5
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 212 bits (517), Expect = 3e-55
Identities = 101/201 (50%), Positives = 144/201 (71%), Gaps = 4/201 (1%)
Frame = +1
Query: 124 WCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLFKYVNYEEPAGP 303
WC +ESDPGVFT+LI + KGVQVEEL++++ LRPV+GLIFLFK++ E+ P
Sbjct: 3 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSISELRPVYGLIFLFKWMAGEKDERP 62
Query: 304 IVSDDRLDKIFFAKQVINNACATQAVISLLLNCKHPDLELGPELTKLKEFSMTFDSRMRG 483
+V D +FFA QVI NACATQA++S+L+N P++++GPEL+ LKEF+ F M+G
Sbjct: 63 VVKDPN-PNLFFASQVIPNACATQAILSILMN--RPEIDIGPELSNLKEFTGAFAPDMKG 119
Query: 484 LSLSNSQTIRSAHNSMAQ-QPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDGLQEGPI 660
L+++NS +IR+AHNS A+ +P + + KD++ YHFI Y+P +G LYELDGL+EGPI
Sbjct: 120 LAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDGLKEGPI 179
Query: 661 DHGAVA--PEQ-DWLDVVRPI 714
G + P+ DWL +V+P+
Sbjct: 180 SLGQCSGGPDDLDWLRMVQPV 200
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 184 bits (448), Expect = 6e-47
Identities = 92/200 (46%), Positives = 134/200 (67%), Gaps = 3/200 (1%)
Frame = +1
Query: 124 WCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLFKYVNYEEPAGP 303
W +E+DPG+FT+L+ + KG+QV+EL++++ +L+PV+GLI L+K+ E+ P
Sbjct: 57 WAAIENDPGIFTELLQQMQLKGLQVDELYSLDLDALNDLQPVYGLIVLYKWQPPEKDERP 116
Query: 304 IVSDDRLDKIFFAKQVINNACATQAVISLLLNCKHPDLELGPELTKLKEFSMTFDSRMRG 483
I D + +FFAKQ+INNACATQA++S+LLN P + L EL KLKEF+ ++G
Sbjct: 117 I--KDPIPNLFFAKQIINNACATQAIVSVLLN--SPGITLSEELKKLKEFAKDLPPDLKG 172
Query: 484 LSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDGLQEGPID 663
L++ NS++IR A NS A +P + K KD+D YHFI Y+P+DG LYELDGL+EGPI
Sbjct: 173 LAIVNSESIRLASNSFA-RPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLKEGPIS 231
Query: 664 HGAV---APEQDWLDVVRPI 714
G + WL +V+P+
Sbjct: 232 LGKCPGGVGDIGWLRMVQPV 251
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 63.3 bits (147), Expect = 2e-10
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 7/204 (3%)
Frame = +1
Query: 124 WCLLESDPGVFTQLIHKFGAKG-VQVEELWTIEDSMFENL-RPVHGLIFLF----KYVNY 285
W LE++P V Q + G +++ ++D M + +PV +I L+ K +
Sbjct: 5 WLPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYPQDRKKESV 64
Query: 286 EEPAGPIVSDDRLDKIFFAKQVINNACATQAVISLLLNC-KHPDLELGPELTKLKEFSMT 462
P+ + S ++F KQ I NAC T +I + N L G + + +
Sbjct: 65 ASPSSTVESKKLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTAD 124
Query: 463 FDSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDG 642
D R L + + AH+ E AKD H++ + +D ++ELDG
Sbjct: 125 MDPAQRASFLEEDEEMEKAHSVAVSAGDTE------AKDGVIEHYVCFSCVDDEIFELDG 178
Query: 643 LQEGPIDHGAVAPEQDWLDVVRPI 714
PI HG +P+ D + I
Sbjct: 179 GNSQPISHGPSSPDSLLQDAAKVI 202
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Frame = +1
Query: 316 DRLDKIFFAKQVINNACATQAVISLLLNCKHP-DLELGPELTKLKEFSMTFDSRMRGLSL 492
D +++F KQ + NAC T VI + N L G + + ++ D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 493 SNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDGLQEGPIDHGA 672
+ AH+ A + D + + HF+ + +DG LYELDG + PI HG
Sbjct: 252 EEDDEMEDAHSVAASAG--DTDANVEVNE----HFVCFSCVDGELYELDGRKSQPICHGP 305
Query: 673 VAPEQDWLDVVRPI 714
+P+ D + I
Sbjct: 306 SSPDTLLQDAAKVI 319
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Frame = +1
Query: 292 PAGPIVSDDRLDKIFFAKQV--INNACATQAVISLLLNCKHPDLELGPELTKLKEFSMTF 465
P+ ++ + +FF KQ+ + NAC T A++ + N E S+
Sbjct: 209 PSQHLLITGEKETLFFIKQIESLGNACGTIALLHAVGNA-------------YSEISLC- 254
Query: 466 DSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDGL 645
R + L + AH S A D K+ D+ H+I ++ DG LYELDG+
Sbjct: 255 ---KRAVFLEKDDDMARAHLSAASAG----DTKL--SDDVEEHYICFVECDGTLYELDGM 305
Query: 646 QEGPIDHG 669
+ GPI+HG
Sbjct: 306 KPGPINHG 313
>07_01_0568 -
4216898-4216911,4216997-4217024,4217265-4217335,
4218026-4218140,4218245-4218314,4218552-4218646,
4219320-4219379,4219476-4219547,4219676-4219819
Length = 222
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 286 EEPAGPIVSDDRLDKIFFAKQVINNACA 369
E+P GP + DD+LD I +K+ +N A
Sbjct: 106 EDPYGPSIIDDKLDAIIVSKETLNGGFA 133
>09_02_0384 - 8294914-8297817
Length = 967
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +1
Query: 112 SAGDWCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFL---FKYVN 282
+A C+LE+ + + K G Q + + + ++F +L+ + L+ L +++V+
Sbjct: 205 AAARGCVLEN---LQMNIAEKLGLLSKQGDSIESRAATIFNHLKNKNFLLLLDDLWEHVD 261
Query: 283 YEEPAGPIVSDDRLDKIFFAKQVINNACATQAVISLLLNCKHPD 414
E P ++ ++ K+ FA + C +A + L C PD
Sbjct: 262 LLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPD 305
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 550 EVDPKMPAKDEDAYHFIGYMPIDGRLYELDGLQEGPIDHGAV 675
EVDP++PA EDA + +G IDG E+ +++G++
Sbjct: 150 EVDPRLPALYEDAKNLVG---IDGPCMEITQWLMDEVENGSI 188
>02_02_0490 -
10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = -1
Query: 288 FIINILEQENETMHW--SQIFKHAV-----FNSPQFLNLYTFGT 178
F+ I+E E MHW ++ A+ F +P F+ + TFGT
Sbjct: 247 FLSKIMELRKEEMHWLKKDVYTSAMLISVFFGAPAFIAMVTFGT 290
>12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746
Length = 241
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 487 SLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFI 600
+L NS IR A++ +PLF V+P + E A+ F+
Sbjct: 193 NLQNSSVIRGAYDMQIDEPLFPVNP-LSFAGEPAWVFV 229
>10_08_0173 +
15414628-15414890,15415001-15415074,15416322-15416401,
15417186-15417231,15417334-15417368,15417751-15417771,
15418418-15419133,15419292-15419324,15419517-15419813,
15420213-15420659,15420738-15420886,15421408-15421697,
15421774-15421898,15422006-15422156
Length = 908
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 383 ITA*VAQALLITCLAKNILSKRSSDTIGPAGSS*LTYLNRKMRPCTGLK 237
+T + + L+ C+ + R + +GP+G+ T+LN + TG K
Sbjct: 317 LTLSIGKKKLLQCVTGKLSPGRVTAIMGPSGAGKTTFLNAVLGKTTGYK 365
>08_02_1188 + 25053594-25054941,25055025-25055650
Length = 657
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 286 EEPAGPIVSDDRLDKIFFAKQVINNACATQAVISLLLNCKHPDLELGPELTKLKE 450
E P +V L ++ KQV+ AV + L C PD EL P + + E
Sbjct: 603 ERPLSEVVDPTLLGEVHAKKQVL-------AVFHVALGCTEPDAELRPRMRAVAE 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,179,807
Number of Sequences: 37544
Number of extensions: 387624
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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