Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2323
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical pr...   205   2e-53
AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    64   9e-11
AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin c-t...    57   1e-08
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    53   2e-07
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    29   2.5  
AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    28   5.8  

>Z46676-9|CAA86665.2|  321|Caenorhabditis elegans Hypothetical
           protein C08B11.7 protein.
          Length = 321

 Score =  205 bits (501), Expect = 2e-53
 Identities = 100/203 (49%), Positives = 140/203 (68%)
 Frame = +1

Query: 106 MDSAGDWCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLFKYVNY 285
           M  AG WCL+ESDPGVFT+++  FG  G+QVEEL++++D      RP +GLIFLFK+   
Sbjct: 1   MTDAGSWCLIESDPGVFTEMLRGFGVDGLQVEELYSLDDDKAMT-RPTYGLIFLFKWRQG 59

Query: 286 EEPAGPIVSDDRLDKIFFAKQVINNACATQAVISLLLNCKHPDLELGPELTKLKEFSMTF 465
           +E  G I SD +   IFFA Q I NACATQA+I+LL+N +  D++LG  L + KEF++  
Sbjct: 60  DETTG-IPSDKQ--NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116

Query: 466 DSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELDGL 645
           D   RG  LSNS+ IR+ HNS ++Q LFE+D K   + ED YHF+ Y+PI  ++YELDGL
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIK-GGESEDNYHFVTYVPIGNKVYELDGL 175

Query: 646 QEGPIDHGAVAPEQDWLDVVRPI 714
           +E P++      EQDW++ ++P+
Sbjct: 176 RELPLEVAEFQKEQDWIEAIKPV 198


>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 4/179 (2%)
 Frame = +1

Query: 115 AGDWCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLF-KYVNYEE 291
           A  W  LES+P V   +I K G  GV+  ++   +D      +P H +I  F +Y   +E
Sbjct: 2   AAPWTPLESNPSVINPMIEKMGVSGVKTVDVLFFDDESIG--KPQHAVILCFPEYKKVDE 59

Query: 292 PAGPIVSDDRL--DKIFFAKQVINNACATQAVISLLLNCKHPDLELGP-ELTKLKEFSMT 462
              PI    +   D +FF KQ I+NAC T A+   L N +   + LG     K    +  
Sbjct: 60  IMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLE-DRINLGDGSFAKWLAEAKK 118

Query: 463 FDSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLYELD 639
                R   L+N+  +   H + A       D +     +  +HFI ++  +G LYE+D
Sbjct: 119 VGIEERSDFLANNAELAGIHAAAA------TDGQTAPSGDVEHHFICFVGKNGILYEID 171


>AC024774-1|AAM43789.1|  227|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 3 protein.
          Length = 227

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
 Frame = +1

Query: 118 GDWCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENL-RPVHGLIFLFKYVNYEEP 294
           G W  LES+P      + K G  G++  ++++ +D M + +  P   LI  F      E 
Sbjct: 7   GGWQALESNPETINPFLKKIGITGLECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREF 66

Query: 295 AGPIVSD-----DRLDKIFFAKQ--VINNACATQAVISLLLNCKHPDLELGP-ELTKLKE 450
                 +     ++ + +FF  Q   I NAC T A+   L N ++  + LG  +  K  E
Sbjct: 67  LSKQYEEVEKNGEKPEGVFFMNQSEEIGNACGTFALFHSLANLEN-RVNLGKGKFAKWYE 125

Query: 451 FSMTFDSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGRLY 630
            +   +   R   LS    +  AH   A++   E        D   YHFI Y+  +G+LY
Sbjct: 126 KAKLVNEDERSDLLSGDTDLAEAHEETAEEGETE------QSDHVDYHFITYVNKNGQLY 179

Query: 631 ELDGLQEGPIDHGA 672
           E+D     P   GA
Sbjct: 180 EIDSCAPFPRPLGA 193


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 9/196 (4%)
 Frame = +1

Query: 112 SAGDWCLLESDPGVFTQLIHKFGAKGVQVEELWTIEDSMFENL-RPVHGLIFLFKYVNYE 288
           + G W  LES+P      + K G  GV+  ++++ +D M + +  P   LI  F      
Sbjct: 4   ATGGWQALESNPETINPFLSKIGVSGVECVDVFSFDDEMLQFIPTPQLALILCFPSSGVR 63

Query: 289 EPAGPIVSD-----DRLDKIFF--AKQVINNACATQAVISLLLNCKHPDLELG-PELTKL 444
           E       +      + D IFF   K+ I +AC T ++   L N ++  + LG  + +K 
Sbjct: 64  EFRAKQYEEVEKNGKKPDGIFFMNQKKEIGHACGTFSLFHSLANLEN-RVNLGNGKFSKW 122

Query: 445 KEFSMTFDSRMRGLSLSNSQTIRSAHNSMAQQPLFEVDPKMPAKDEDAYHFIGYMPIDGR 624
            E +       R   L     +  AH   A+    E + + P  +  AYHFI Y+  +G+
Sbjct: 123 FEKAKLVGEGERSDLLLADTDLAEAHKETAE----EGETEHP--EHVAYHFITYVNKNGQ 176

Query: 625 LYELDGLQEGPIDHGA 672
           L+E+D     P   GA
Sbjct: 177 LFEIDSCSPFPRPLGA 192


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 291 FFIINILEQENETMHWS-QIFKHAVFNSPQFLNLYTFGTKFVN*LSENSRITL*ETPIPG 115
           FFI+NI+      + +S  I KH  F SPQ ++  T+G      L+EN  I + +     
Sbjct: 178 FFIVNIIGYIGIHICYSYNIKKHRKFYSPQCISRVTYGLSERFQLAEN--IKMCKVLKKV 235

Query: 114 RIHLWSFSLRCCT 76
           +I +  F++ CC+
Sbjct: 236 QISILFFNIGCCS 248


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 711 WTDNIEPILFRSNCTMINRTFL*PIQFVKTAINWHISYEMIGVFIFGRHFRVY 553
           ++DN+  I+F S    +       ++F+  AI   ++ + I V +F +HF  Y
Sbjct: 95  YSDNMTAIMFTSEECFVQHVLNSCVRFLFIAIELALNVDRIIVILFRKHFHCY 147


>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 342 GKKYFV*AII*YNRPSGFFII---NILEQENETMHWSQIFKHAVFNSPQFLNLYTFGTKF 172
           G++ FV  I  ++   G  +I   NI  Q    + W+   +  VF+  Q L  + FG K+
Sbjct: 175 GERQFVICIFDFDA-KGVTVITDENICNQTITAVEWTPDGRGIVFHRGQDLLWHRFGEKY 233

Query: 171 VN*LSEN 151
           +N +S N
Sbjct: 234 INEISTN 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,923
Number of Sequences: 27780
Number of extensions: 359196
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)