Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2323
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 114 RIHLWSFSLRCCTDTVGFL 58
           R+ LW F+L C   T+G +
Sbjct: 483 RLFLWVFTLACTAGTLGII 501


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 154 FTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLFKYVNYEE 291
           F  +  K  A  ++ E    I +++F+N+  +      F+Y ++EE
Sbjct: 391 FNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDWEE 436


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 154 FTQLIHKFGAKGVQVEELWTIEDSMFENLRPVHGLIFLFKYVNYEE 291
           F  +  K  A  ++ E    I +++F+N+  +      F+Y ++EE
Sbjct: 391 FNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDWEE 436


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 306 NRPSGFFIINILEQENETMH 247
           N P G   + ++  ENET H
Sbjct: 271 NAPEGLLGLKLINAENETAH 290


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 550 EVDPKMPAKDEDAYHFIGYMPIDGRLYELDGLQEG 654
           E++PK    DE   H + +     RL++   L+EG
Sbjct: 8   EINPKEGLYDEGGKHTVHWFRKGLRLHDNPSLREG 42


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 123 IPGRIHLWSFSLRCCTDTVGFLETKVIHDA 34
           +PG   L  F  R     +G+ +   IHDA
Sbjct: 53  VPGPFSLPIFGTRWIFSCIGYYKLNKIHDA 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 329 LSKRSSDTIGPAGSS*LTYLNRKMRPCTGLKFSNMLSSIVHSSST 195
           L + +S  +GP     L   N  M+P   +K      SI+ S +T
Sbjct: 414 LGELASSFVGPKVKDCLISWNPLMQPKQPIKLFEQWKSILESGTT 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,344
Number of Sequences: 438
Number of extensions: 4300
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)