Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2321
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0189 + 32214702-32215154                                         29   1.8  
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028     28   5.5  
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    27   7.2  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   7.2  
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    27   9.6  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    27   9.6  

>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 474 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 367
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
          Length = 444

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -1

Query: 507 PGQISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*M 328
           P Q  RV+S  A  + P   LPS+P   SF   L    +   F  +A   ++  +ADR +
Sbjct: 54  PSQFGRVDS--ALVADPALPLPSLPARPSFIRRLSFAPQTRRFSSSAFGRLLDAAADRGL 111

Query: 327 TYLRLELGR 301
           + L + L R
Sbjct: 112 SELAVRLPR 120


>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
            20712000-20712293,20712603-20712728,20712827-20712896,
            20712992-20713182,20713394-20713519,20713878-20714279,
            20714364-20714758,20714861-20715315,20715403-20715524,
            20715653-20715693,20716026-20716129,20716363-20716576,
            20717667-20717780,20718576-20718612
          Length = 1046

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 493  PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 332
            PC   L R   S W   V++   Q C  + P  +   +P   PP   S VGG L
Sbjct: 936  PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = +2

Query: 203 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRY-RPSSNRKYVI*RSADVTTMARRAASG 379
           +++    N   SIC RC H S  K +  K   Y    +  ++ +          +  A  
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWWVQCDKCKAWQHQICALF 620

Query: 380 KPKILDSGGSMV-AKLKLKGIDGRAPPGVEPA 472
            PKI+D       AK  LK  D      +EP+
Sbjct: 621 NPKIVDPEAEYTCAKCFLKEKDNEDVDSLEPS 652


>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 471 AGSTPGGALPSIPLSFSFATILPPESKIFGFP 376
           + +  GG  P +  SF    IL P+SK++GFP
Sbjct: 72  SSAAAGGGGPGMTTSFR---ILCPQSKVYGFP 100


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 528 SILPVSGPGQISRVESN*AAGSTPGGALPSIPLSFSF 418
           +ILP   PG  S + S    G TP G +   P  F F
Sbjct: 336 AILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,687,030
Number of Sequences: 37544
Number of extensions: 334713
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)