Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2319
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    27   3.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   7.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   7.7  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 555 HIYFGFNKPPDCTYCAIALLPKGAHVTGRTKSE 653
           H YF  +KP     C +  +PKG  VTG  K+E
Sbjct: 21  HFYFDGSKPK----CFLKDMPKGMMVTGIVKAE 49


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 461 LARSYSSLLIIPYLKNVDKSVESRRS 538
           L +S S++LI+PYLK+  K++E+  S
Sbjct: 559 LKKSSSNILIMPYLKDY-KTIENESS 583


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 138 ILLTCQNRIKQLRFSSLYSYPSQLYMLTYPCIIIY 34
           +L TC N +K   F + Y    ++Y L     ++Y
Sbjct: 350 VLRTCANELKMTSFVTAYQASEKIYKLFDRICVLY 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,614
Number of Sequences: 5004
Number of extensions: 51622
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)