Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2319
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   3.1  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   7.1  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   7.1  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 576 KPPDCTYCAIALLPKGAH-VTGRTKSEILI 662
           KPP+   CAI +LP GA  +TG     I+I
Sbjct: 24  KPPENKICAIRVLPDGATIITGAENGHIII 53


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -3

Query: 512 LRFSNRELLKVTNSFELIYVRYKSKSFTENSINSAFSELNQ*TKYESTTYFFKNYSVHSK 333
           +++  R  + + NS+++    Y  KSFTE  +N      +Q    +   +F  +Y +H +
Sbjct: 21  VQYEIRGNIDLINSYDIHPDYYNEKSFTE-KLNKVSERFSQVVGPDFKEFFVHDYKIHGQ 79

Query: 332 PVSL 321
             ++
Sbjct: 80  DTAV 83


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 460 ISSKLFVTFNNSLFEKRRQVR*ITTKRDINMHIFISDLTNR 582
           +S + FV  +  L  K RQV  ++ KRDIN   F+ +   R
Sbjct: 152 LSDEAFVFLHMLLSLKYRQVVVLSVKRDINADQFVEEFEKR 192


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 460 ISSKLFVTFNNSLFEKRRQVR*ITTKRDINMHIFISDLTNR 582
           +S + FV  +  L  K RQV  ++ KRDIN   F+ +   R
Sbjct: 152 LSDEAFVFLHMLLSLKYRQVVVLSVKRDINADQFVEEFEKR 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,279
Number of Sequences: 27780
Number of extensions: 277353
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)