Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2317
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 79 1e-15
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 79 1e-15
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 78 2e-15
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 31 0.31
08_01_0396 - 3507735-3507879,3507940-3507971,3508324-3508326 28 2.2
01_07_0385 - 43212580-43213142,43213234-43213612 27 5.0
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 6.6
03_06_0588 - 34924061-34924644,34924662-34925058 27 6.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 6.6
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 26 8.7
07_03_0093 + 13330867-13332312 26 8.7
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 79.0 bits (186), Expect = 1e-15
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +3
Query: 33 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALT 161
PKH MLDKLGG +AP+PS+GPHK RECLPL++++RN LKYALT
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALT 57
Score = 60.9 bits (141), Expect = 3e-10
Identities = 34/71 (47%), Positives = 44/71 (61%)
Frame = +1
Query: 169 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPLRR 348
EV+ I+ QR + VDGKVRTD TYPAGFMDV+ I KT E + + G + L
Sbjct: 60 EVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGR-FRLQSVKDED 118
Query: 349 LRYKLCKVKRV 381
++KLCKV+ V
Sbjct: 119 AKFKLCKVRSV 129
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 5 KKHLKRLNASKAW 43
KKHLKRLNA K W
Sbjct: 6 KKHLKRLNAPKHW 18
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 79.0 bits (186), Expect = 1e-15
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +3
Query: 33 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALT 161
PKH MLDKLGG +AP+PS+GPHK RECLPL++++RN LKYALT
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALT 57
Score = 60.9 bits (141), Expect = 3e-10
Identities = 34/71 (47%), Positives = 44/71 (61%)
Frame = +1
Query: 169 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPLRR 348
EV+ I+ QR + VDGKVRTD TYPAGFMDV+ I KT E + + G + L
Sbjct: 60 EVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGR-FRLQSVKDED 118
Query: 349 LRYKLCKVKRV 381
++KLCKV+ V
Sbjct: 119 AKFKLCKVRSV 129
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 5 KKHLKRLNASKAW 43
KKHLKRLNA K W
Sbjct: 6 KKHLKRLNAPKHW 18
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 78.2 bits (184), Expect = 2e-15
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +3
Query: 33 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALT 161
P H MLDKLGG +AP+PS+GPHK RECLPL+++LRN LKYALT
Sbjct: 31 PSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALT 73
Score = 62.9 bits (146), Expect = 8e-11
Identities = 36/71 (50%), Positives = 44/71 (61%)
Frame = +1
Query: 169 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPLRR 348
EV+ I+ QR + VDGKVRTD TYPAGFMDVV I KT E F + G + L
Sbjct: 76 EVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGR-FRLHSIKDED 134
Query: 349 LRYKLCKVKRV 381
++KLCKV+ V
Sbjct: 135 AKFKLCKVRSV 145
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 31.1 bits (67), Expect = 0.31
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 276 SLLNSNNIHKSSRISRVSPNFPINLYEALFHNF-QDFVSRSKHTSKNSSVKSPGASTRAT 100
+L +SN+ H + + L + F N+ D + + H K+SS+ G S+ +
Sbjct: 2858 TLQSSNDDHDKNEFASQLIRACSALRQQSFLNYLMDILQQLVHVFKSSSINGEGGSSSSG 2917
Query: 99 CGDRLTV 79
CG LTV
Sbjct: 2918 CGSLLTV 2924
>08_01_0396 - 3507735-3507879,3507940-3507971,3508324-3508326
Length = 59
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 2 PKKHLKRLNASKAWDVGQTWRCV 70
P ++L+ A AW VG WRC+
Sbjct: 34 PHRNLQLWEAGVAWRVGWLWRCI 56
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.1 bits (57), Expect = 5.0
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -2
Query: 282 FISLLNSNNIHKSSRISRVSPNFPINLYEALFHNFQDFVSRSKHTSKNSSV---KSPGAS 112
F+++L N I +R+S VS F +Y A+ + FV + ++ P
Sbjct: 91 FMTVLFGNLIDAVNRVSMVSLEF---IYLAIASSVASFVRDMLDDPRRAAGGEDTEPVPQ 147
Query: 111 TRATCGDRLTVSVHTHRQ 58
GDRL VH HR+
Sbjct: 148 DHPEAGDRLLRQVHQHRR 165
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 39 HGMLDKLGGVYAPRPSTGPHK 101
HG LD L G AP+P+ HK
Sbjct: 949 HGYLDNLTGGNAPKPTRPQHK 969
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 121 RGKHSRNLWGPVDGLGAYTPPS 56
R H+RNLWG ++G+ P S
Sbjct: 148 RCHHARNLWGAMEGIYQLPPDS 169
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 148 FKKFLSKITRGKHSRNLWGPVDGLGAYTPPSLSN 47
F L+++ + L G G+G Y PPSLSN
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSN 68
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 129 KSPGASTRATCGDRLTVSVH 70
+SPG + RA GD L V+VH
Sbjct: 52 ESPGPTIRAAQGDTLVVTVH 71
>07_03_0093 + 13330867-13332312
Length = 481
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 27 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALTGKRSPENCETTP 197
TL + G L + AP P++ PH L L L +FL+ SP++ +P
Sbjct: 21 TLSRAGASSPLASL-APTPASAPHFLDRDPRLFATLLSFLRRGRLAPTSPDSDPPSP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,524
Number of Sequences: 37544
Number of extensions: 195436
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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