Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2317
         (382 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...    79   1e-15
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...    79   1e-15
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...    79   1e-15
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...    76   1e-14
BT025848-1|ABF85748.1| 1384|Drosophila melanogaster IP14838p pro...    30   1.2  
BT021360-1|AAX33508.1| 1458|Drosophila melanogaster LP14662p pro...    30   1.2  
AY865070-1|AAW79473.1|  317|Drosophila melanogaster SR-CIII prot...    30   1.2  
AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB...    30   1.2  
AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA...    30   1.2  
BT023919-1|ABB36423.1| 1124|Drosophila melanogaster RH42017p pro...    29   2.7  
AL031765-7|CAA21125.1| 1398|Drosophila melanogaster EG:22E5.8 pr...    29   2.7  
AE014298-317|AAF45711.1| 1398|Drosophila melanogaster CG4290-PA ...    29   2.7  
AE014298-1000|AAN09196.1|  319|Drosophila melanogaster CG14425-P...    28   4.7  
BT030437-1|ABO52857.1|  566|Drosophila melanogaster IP18510p pro...    27   8.2  
BT025089-1|ABE73260.1|  764|Drosophila melanogaster IP13014p pro...    27   8.2  
AE014297-633|AAF53999.2| 1148|Drosophila melanogaster CG34127-PA...    27   8.2  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 41/72 (56%), Positives = 49/72 (68%)
 Frame = +1

Query: 163 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPL 342
           G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+ +EKT E F +     G      +S  
Sbjct: 58  GAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRIS-A 116

Query: 343 RRLRYKLCKVKR 378
              +YKLCKVK+
Sbjct: 117 EEAKYKLCKVKK 128



 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +3

Query: 33  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALTG 164
           PK  MLDKLGGV+APRPSTGPHKLRE LPL+I LRN LKYAL G
Sbjct: 15  PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNG 58



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 2  PKKHLKRLNASKAW 43
          PKKHLKRL A KAW
Sbjct: 5  PKKHLKRLAAPKAW 18


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 41/72 (56%), Positives = 49/72 (68%)
 Frame = +1

Query: 163 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPL 342
           G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+ +EKT E F +     G      +S  
Sbjct: 58  GAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRIS-A 116

Query: 343 RRLRYKLCKVKR 378
              +YKLCKVK+
Sbjct: 117 EEAKYKLCKVKK 128



 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +3

Query: 33  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALTG 164
           PK  MLDKLGGV+APRPSTGPHKLRE LPL+I LRN LKYAL G
Sbjct: 15  PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNG 58



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 2  PKKHLKRLNASKAW 43
          PKKHLKRL A KAW
Sbjct: 5  PKKHLKRLAAPKAW 18


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 41/72 (56%), Positives = 49/72 (68%)
 Frame = +1

Query: 163 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPL 342
           G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+ +EKT E F +     G      +S  
Sbjct: 58  GAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRIS-A 116

Query: 343 RRLRYKLCKVKR 378
              +YKLCKVK+
Sbjct: 117 EEAKYKLCKVKK 128



 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +3

Query: 33  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALTG 164
           PK  MLDKLGGV+APRPSTGPHKLRE LPL+I LRN LKYAL G
Sbjct: 15  PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNG 58



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 2  PKKHLKRLNASKAW 43
          PKKHLKRL A KAW
Sbjct: 5  PKKHLKRLAAPKAW 18


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 35/44 (79%), Positives = 37/44 (84%)
 Frame = +3

Query: 33  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYALTG 164
           PK  MLDKLGGV+APRPSTGPHKLRE LPL+  LRN LKYAL G
Sbjct: 15  PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNG 58



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 40/72 (55%), Positives = 48/72 (66%)
 Frame = +1

Query: 163 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPL 342
           G EV KIV QRL+KV GKVRTDPTYPAG+MDV+ +EKT E F +     G      +S  
Sbjct: 58  GAEVTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRIS-A 116

Query: 343 RRLRYKLCKVKR 378
              +YKLCKVK+
Sbjct: 117 EEAKYKLCKVKK 128



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 2  PKKHLKRLNASKAW 43
          PKKHLKRL A KAW
Sbjct: 5  PKKHLKRLAAPKAW 18


>BT025848-1|ABF85748.1| 1384|Drosophila melanogaster IP14838p
           protein.
          Length = 1384

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  AFEALKRFQSMGCWTNLA-VCMHRDRQPVPTSC 105
           A+ +++  QS   WTNLA +C+H +R  V   C
Sbjct: 704 AYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 736


>BT021360-1|AAX33508.1| 1458|Drosophila melanogaster LP14662p
           protein.
          Length = 1458

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  AFEALKRFQSMGCWTNLA-VCMHRDRQPVPTSC 105
           A+ +++  QS   WTNLA +C+H +R  V   C
Sbjct: 778 AYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 810


>AY865070-1|AAW79473.1|  317|Drosophila melanogaster SR-CIII
           protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 285 HFISLLNSNNIHKSSRISRVSPNFPINLYEALFHNFQDFVSRSKHTSKNSSVK 127
           HFI L   + +H S     +SP +P N + +L+  F+ F+  S+  +   SVK
Sbjct: 190 HFIRL--QSQVHASRTYHFISPIYPRNSFHSLWFQFELFMFGSEVRNLTISVK 240


>AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB,
           isoform B protein.
          Length = 1503

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  AFEALKRFQSMGCWTNLA-VCMHRDRQPVPTSC 105
           A+ +++  QS   WTNLA +C+H +R  V   C
Sbjct: 823 AYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 855


>AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA,
           isoform A protein.
          Length = 1443

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  AFEALKRFQSMGCWTNLA-VCMHRDRQPVPTSC 105
           A+ +++  QS   WTNLA +C+H +R  V   C
Sbjct: 763 AYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVC 795


>BT023919-1|ABB36423.1| 1124|Drosophila melanogaster RH42017p
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 154 AYFKKFLSKITRGKHSRNLWGPVDGLGAYTPPSLSNIP-CFGS 29
           +Y K     ++RG    N  GP D L    P    ++P C GS
Sbjct: 630 SYSKSLSQNLSRGSSKSNCSGPYDSLDFALPSGKGSLPSCMGS 672


>AL031765-7|CAA21125.1| 1398|Drosophila melanogaster EG:22E5.8
            protein.
          Length = 1398

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 154  AYFKKFLSKITRGKHSRNLWGPVDGLGAYTPPSLSNIP-CFGS 29
            +Y K     ++RG    N  GP D L    P    ++P C GS
Sbjct: 904  SYSKSLSQNLSRGSSKSNCSGPYDSLDFALPSGKGSLPSCMGS 946


>AE014298-317|AAF45711.1| 1398|Drosophila melanogaster CG4290-PA
            protein.
          Length = 1398

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 154  AYFKKFLSKITRGKHSRNLWGPVDGLGAYTPPSLSNIP-CFGS 29
            +Y K     ++RG    N  GP D L    P    ++P C GS
Sbjct: 904  SYSKSLSQNLSRGSSKSNCSGPYDSLDFALPSGKGSLPSCMGS 946


>AE014298-1000|AAN09196.1|  319|Drosophila melanogaster CG14425-PA,
           isoform A protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = -2

Query: 294 NTKHFIS-LLNSNNI--HKSSRISRVSPNFPINLYEALFHNFQDFVSRSKHTSKNSSVKS 124
           N+ HF S L  S+N   H S   +  + N       A   NF +  + S + SKN S   
Sbjct: 168 NSGHFASNLAGSSNFTNHLSGSNNYTNSNGNFTSNAASSSNFSNNAASSTNYSKNCSSGV 227

Query: 123 PGASTRATCGDRLTVSVHTH 64
            G S   +C  + T + + H
Sbjct: 228 VGNSDPDSCSRKHTTNTNNH 247


>BT030437-1|ABO52857.1|  566|Drosophila melanogaster IP18510p
           protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -2

Query: 267 NSNNIHKSSRISRVSPNFPINLYEALFHNFQDFVSRSKHTSKNSSVKSPGASTRATCGDR 88
           NS N+  S +    + N  + L  +         S S  +S ++ + SPG+S+ ++    
Sbjct: 59  NSGNLSTSQKSPSSANNGGLVLIGSSSATSSSVPSLSLTSSSSAGLSSPGSSSSSSSSST 118

Query: 87  LTVSVHTHRQVCPTSH 40
            T   +++R   PTS+
Sbjct: 119 STSGSNSNRSSRPTSN 134


>BT025089-1|ABE73260.1|  764|Drosophila melanogaster IP13014p
           protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -2

Query: 168 VSRSKHTSKNSSVKS----PGASTRATCGDRLTVSVHTHRQVCPTSHALEAFKRFKCFLG 1
           VS S +T  N S ++    P  STR T       +V TH  +  +SH +   K F   LG
Sbjct: 455 VSTSLYTRSNESTRTDCNNPAQSTRTT-------TVLTHNSISASSHQIVGHKTFSPILG 507


>AE014297-633|AAF53999.2| 1148|Drosophila melanogaster CG34127-PA
           protein.
          Length = 1148

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -2

Query: 267 NSNNIHKSSRISRVSPNFPINLYEALFHNFQDFVSRSKHTSKNSSVKSPGASTRATCGDR 88
           NS N+  S +    + N  + L  +         S S  +S ++ + SPG+S+ ++    
Sbjct: 59  NSGNLSTSQKSPSSANNGGLVLIGSSSATSSSVPSLSLTSSSSAGLSSPGSSSSSSSSST 118

Query: 87  LTVSVHTHRQVCPTSH 40
            T   +++R   PTS+
Sbjct: 119 STSGSNSNRSSRPTSN 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,951
Number of Sequences: 53049
Number of extensions: 350906
Number of successful extensions: 1063
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)