Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2317
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...    69   2e-12
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    31   0.37 
AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    27   3.4  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical...    26   7.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +3

Query: 33  PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVILLRNFLKYAL 158
           P H MLDKLGGV+A RP+ GPHKLRE LPL + LRN LKYAL
Sbjct: 14  PSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYAL 55



 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 34/71 (47%), Positives = 43/71 (60%)
 Frame = +1

Query: 169 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV*IEKTNEMFGVNL*C*GEIYNLIVSPLRR 348
           E  KI+ QR+++VDGKVRT   +P GFMDVV IE+TNE F +     G  Y +       
Sbjct: 59  EAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGR-YVVHRIQAAE 117

Query: 349 LRYKLCKVKRV 381
             +KLCKVK V
Sbjct: 118 ADFKLCKVKSV 128


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 97  WGPVDGLGAYTPPSLSNIPCFGS 29
           +GP+ GLG +T P+L  +P FG+
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGN 97


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 97  WGPVDGLGAYTPPSLSNIPCFGS 29
           +GP+ GLG +T P+L  +P FG+
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGN 97


>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 150 TSKNSSVKSPGASTRATCGDRLTVSVHTHRQVCPTSHALE 31
           TS+NSS   P A + +T     T +  TH +  P  H  E
Sbjct: 179 TSENSSTAEPFAPSDSTTSINETQTTSTHAETTPEIHYTE 218


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  GCWTNLAVCMHRDRQPVPTSCASA 114
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  GCWTNLAVCMHRDRQPVPTSCASA 114
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  GCWTNLAVCMHRDRQPVPTSCASA 114
           G    +AVC++ D++PVP  C  A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687


>AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical
           protein Y25C1A.1 protein.
          Length = 578

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 291 TKHFISLLNSNNIHKSSRISRVSPNFPINLYEAL 190
           T+  + LL +NN  KSS  +R    +P NLY  L
Sbjct: 293 TQEVMELL-TNNRPKSSHFTRSGGEYPFNLYRDL 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,997
Number of Sequences: 27780
Number of extensions: 172154
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)