Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2316
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 2.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 27 3.1
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 27 4.0
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 26 5.4
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 26 5.4
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 7.1
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 5 FVSHECEASVQFQR*PFKTARNSYIAHTVL*HYLYKLCNFSG 130
FV + +A QR FKT N +A ++L Y+Y N+ G
Sbjct: 267 FVQNYGKALQHIQR-AFKTRNNDPVASSILERYVYSKKNYEG 307
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS**TTVIT 584
T I SS +L +TSSS V+ S S +LNS +T IT
Sbjct: 3082 TPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNS--STAIT 3121
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSSS ++ S S ILNS
Sbjct: 3104 SSTPITSSSVLNSSTAITSSSILNSSTPITSSSILNS 3140
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSSS V+ S S +LNS
Sbjct: 3166 TPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNS 3200
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSSS ++ S S +LNS
Sbjct: 380 SSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNS 416
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSSS ++ S S ILNS
Sbjct: 392 SSTPITSSSILNTSTPITSSSVLNSSTPITSSSILNS 428
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS ++ +TSSS ++ S S ILNS
Sbjct: 3092 SSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNS 3128
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSS+ V+ S S +LNS
Sbjct: 764 SSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 800
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS**TTVIT 584
T I SS +L +TSSS ++ S S +LNS +T IT
Sbjct: 982 TPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNS--STAIT 1021
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSS+ V+ S S +LNS
Sbjct: 1928 SSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNS 1964
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2120 SSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNS 2156
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2432 SSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNS 2468
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 715 SFTEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
S T I SS +L +TSS+ V+ S S +LNS
Sbjct: 3236 SSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 3272
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS ++ +TSSS ++ S A S ILNS
Sbjct: 3430 TPITSSTVVNSSTPITSSSVLNSSTAIASSSILNS 3464
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 538 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 572
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSSS ++ S S +LNS
Sbjct: 742 TPITSSSVLNSSTPITSSSILNSSTPITSSSVLNS 776
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSSS ++ S S +LNS
Sbjct: 1222 TPITSSSVLNSSTPITSSSILNSSTPITSSSVLNS 1256
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 1306 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 1340
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2374 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 2408
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2398 TPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNS 2432
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2650 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 2684
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2878 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 2912
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSS+ V+ S S +LNS
Sbjct: 2974 TSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 3008
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 709 TEIFSSGLLEEPREVTSSSFVSFSHICALSQILNS 605
T I SS +L +TSSS ++ S S +LNS
Sbjct: 3334 TPITSSSVLNSSTAITSSSILNSSTPVTSSSVLNS 3368
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 659 QQLCFIFPHLCTFTDIKQLINHRYYTFKPEETLN-RQNKTNHTTSLLAFP 513
QQL IFP + F ++ + + Y ++ L R N + TSLL P
Sbjct: 489 QQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAP 538
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 667 VTSSSFVSFSHICALSQILNS**TTVITHLNLK-KH*IDKIKQ 542
VT SF FSHI A+ N I LN+K KH D + +
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKHWRDLVNE 154
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 254 IYIKESRVSYTIYNSGTAELI 316
++ +E R+SYT+Y +G L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 662 VQQLCFIFPHLCTFTDIK-QLINHRYYTFKPE 570
+QQ+C +F H T D + Q++ Y+ PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 440 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 318
C S+ C F+ S + + S+ C SP LPPH S+
Sbjct: 19 CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,568
Number of Sequences: 5004
Number of extensions: 68654
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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