Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2311
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   2.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.2  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 22  QASIARYQIQMQY*ELHLNYPLFRTLQIQILVVLC 126
           + S  RYQ      E H N  L R  +I+I   LC
Sbjct: 12  RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 46


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 64  ELHLNYPLFRTLQIQILVVLCHMTQPNNLNHLSQPPFIVTLPIC 195
           EL+    L + + IQ   V C M +   L   ++PPF+V L  C
Sbjct: 10  ELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSC 53


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 224 FSYLIRCKSWQIGSVTMK 171
           FSYL+ CK++   +  +K
Sbjct: 29  FSYLLNCKNYDHPTTLLK 46


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 371 HRSGYNKKLFNLIVH 415
           H + YNKKL+  I++
Sbjct: 324 HNNNYNKKLYYNIIN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,319
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)