Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2306
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   1.8  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    26   4.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   5.5  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   5.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.6  

>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 89  SVATMSAWTEEMLSWRDERLG-LTELPSTTTRRKHRSAPY 205
           SV+  S WTEE L    E  G L  +P ++T+   R  P+
Sbjct: 359 SVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPH 398


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 262 SGNSH-LEAVSRVVGAYI*KTTGARQGPSCTSLSRVGGTQLIEDLF 396
           +G+S  +E ++R     I  T G+     C  +++VGG+QL E+ F
Sbjct: 173 TGHSRGIECITRQPNTDIFWTCGSESSIRCWHITKVGGSQLEEEGF 218


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 111 GLRKCCPGGTNGLALPSYRA-RRRGEN 188
           G R C  GG NGL L  Y+  R RG +
Sbjct: 265 GERGCLMGGINGLFLAQYQVLRERGHS 291


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 489 ILVIFLLHV*LRMQPVQEQVSVNAERFLRHAKQIFDQLGPSHARQTCAARPLSRTGSLS 313
           ++++F  H  L    VQE +S+  E +      + +   P  A  T ++ P+S   S S
Sbjct: 160 VVLLFKDHSSLAKGHVQEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSAS 218


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 146 LGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHIS 280
           +G   LP+ T+ +  R     LHR   PS     P   P  +H+S
Sbjct: 325 VGSVPLPAPTSSQSLRLGS--LHRSRSPSPRSGRPRRSPSPSHLS 367


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 170 TTTRRKHRSAPYRLHRPHLPSAHVSEP 250
           T T    R A  R+HRP+ P   + EP
Sbjct: 43  TQTEANSRLASQRVHRPNSPHLTIYEP 69


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 89  SVATMSAWTEEMLSWRDERLGLTELPSTTTRRKHRS--APYRLHRPHLPSAHVSEPPTEP 262
           +V T    +   LS++++R   T+LPS     KH +  +P+ +H P++    +     E 
Sbjct: 637 TVNTKEIRSRSALSYQNDRPLATDLPSVIYNHKHPNVVSPFYVH-PYIKQGILKFQSKES 695

Query: 263 QGTHISRLYPELLALI 310
                  ++  +LA++
Sbjct: 696 HKFRKKEVWSTVLAVL 711


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,346
Number of Sequences: 5004
Number of extensions: 50097
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)