Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2306
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical pr... 46 2e-05
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 31 0.54
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 31 0.54
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 29 2.9
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical p... 28 3.8
Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical pr... 28 3.8
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 5.0
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 5.0
AL032647-5|CAA21693.1| 370|Caenorhabditis elegans Hypothetical ... 27 6.7
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 8.8
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 8.8
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 8.8
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 27 8.8
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 27 8.8
>U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical
protein K02A6.3a protein.
Length = 483
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 293 ELLALIFERLPVRDRGRAAQVCRAWEGPS*SKICLAWRK 409
ELL IF+RLPV+++GR +QVCR W+ SK L+WRK
Sbjct: 13 ELLEDIFQRLPVKNKGRCSQVCRQWQRGFNSK--LSWRK 49
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 251 PTEPQGTHISRLYP-ELLALIFERLPVRDRGRAAQVCRAW 367
P + + I+R+ P E+L +F L + R+AQVCR+W
Sbjct: 48 PAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 251 PTEPQGTHISRLYP-ELLALIFERLPVRDRGRAAQVCRAW 367
P + + I+R+ P E+L +F L + R+AQVCR+W
Sbjct: 48 PAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 218 PHLPSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAW 367
PH P P+ SRL ++L IF+ LP++D A C +W
Sbjct: 64 PHSIPPRRRRSPRRPE-VSASRLPLKVLNQIFQYLPLKDLRSAMLTCHSW 112
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3
Query: 510 LSFFKVTILVIFLLHV*LRMQPVQEQVSVNAERFLRHAKQIFDQLGPSHARQTCAARPL 334
LS F + L IF+ + M +Q+QV E F ++ L R T +RPL
Sbjct: 12 LSGFAILALTIFVPQIYWEMSDLQDQVVGVVESFKVETDSLWIDLMDVQIRHTAPSRPL 70
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3
Query: 510 LSFFKVTILVIFLLHV*LRMQPVQEQVSVNAERFLRHAKQIFDQLGPSHARQTCAARPL 334
LS F + L IF+ + M +Q+QV E F ++ L R T +RPL
Sbjct: 12 LSGFAILALTIFVPQIYWEMSDLQDQVVGVVESFKVETDSLWIDLMDVQIRHTAPSRPL 70
>Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 158 ELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFE 316
++ S TT + S PY H P+ +E PT G + PE +A FE
Sbjct: 29 DVSSFTTTSESTSPPYSSSEHHSPTDQRTETPTSDSGN--ASFSPENVATSFE 79
>Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 158 ELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFE 316
++ S TT + S PY H P+ +E PT G + PE +A FE
Sbjct: 29 DVSSFTTTSESTSPPYSSSEHHSPTDQRTETPTSDSGN--ASFSPENVATSFE 79
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +1
Query: 208 TTPAAFAFRSRVRAPD*ASGNSHLEAVSRVVGAYI*KTTGARQGPSCTSLSRVGGTQLIE 387
TTP P SGNS L + ++ G I R P ++ + QLI
Sbjct: 770 TTPTHSQGAPSTSTPIGGSGNSTLSVLHQMEGLAIVYLCQTRSNPRAIAVKILKEIQLIY 829
Query: 388 DLFGV 402
DL G+
Sbjct: 830 DLLGI 834
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +1
Query: 208 TTPAAFAFRSRVRAPD*ASGNSHLEAVSRVVGAYI*KTTGARQGPSCTSLSRVGGTQLIE 387
TTP P SGNS L + ++ G I R P ++ + QLI
Sbjct: 770 TTPTHSQGAPSTSTPIGGSGNSTLSVLHQMEGLAIVYLCQTRSNPRAIAVKILKEIQLIY 829
Query: 388 DLFGV 402
DL G+
Sbjct: 830 DLLGI 834
>AL032647-5|CAA21693.1| 370|Caenorhabditis elegans Hypothetical
protein Y57A10B.6 protein.
Length = 370
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 29 PIHTSFSENRSDAS*HVKVCSVATMSAWTEEMLSWRDERLGLTELPSTTTRRKHRSAPYR 208
PIH F+ NR + + + A EEM+S E +G ELP R+ +
Sbjct: 191 PIHGDFTHNRMEIE---MIFLAQCIKAGNEEMISTAIEFVGTDELPLEFYRKYDIALSCH 247
Query: 209 LHRP 220
L+ P
Sbjct: 248 LYCP 251
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 372 PSHARQTCAARPLSRTGSLSNISANNSG 289
P HA+Q AA +S GSL + +SG
Sbjct: 1510 PQHAQQFSAAPTMSAQGSLQQMQGTSSG 1537
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 372 PSHARQTCAARPLSRTGSLSNISANNSG 289
P HA+Q AA +S GSL + +SG
Sbjct: 1629 PQHAQQFSAAPTMSAQGSLQQMQGTSSG 1656
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 372 PSHARQTCAARPLSRTGSLSNISANNSG 289
P HA+Q AA +S GSL + +SG
Sbjct: 1629 PQHAQQFSAAPTMSAQGSLQQMQGTSSG 1656
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 134 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTE 259
R ERLG T L ++ S+ P +PS H + PPT+
Sbjct: 953 RHERLGKT-LSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQ 993
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 134 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTE 259
R ERLG T L ++ S+ P +PS H + PPT+
Sbjct: 953 RHERLGKT-LSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQ 993
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,349
Number of Sequences: 27780
Number of extensions: 309689
Number of successful extensions: 891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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