Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2302
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 286 1e-77
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 286 1e-77
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 111 5e-25
Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical pr... 33 0.27
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.4
U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical p... 28 7.6
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 286 bits (701), Expect = 1e-77
Identities = 127/210 (60%), Positives = 161/210 (76%), Gaps = 1/210 (0%)
Frame = +3
Query: 87 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 266
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 267 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 443
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 444 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 623
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 624 LKADWDFLPPKKIKDPEAKKPEDWDDKPTI 713
L+ DWD LP KKIKDP+AKKPEDWD++ I
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYI 220
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 286 bits (701), Expect = 1e-77
Identities = 127/210 (60%), Positives = 161/210 (76%), Gaps = 1/210 (0%)
Frame = +3
Query: 87 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 266
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 267 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 443
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 444 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 623
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 624 LKADWDFLPPKKIKDPEAKKPEDWDDKPTI 713
L+ DWD LP KKIKDP+AKKPEDWD++ I
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYI 220
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 111 bits (267), Expect = 5e-25
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Frame = +3
Query: 219 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 389
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 390 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 539
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 540 YTHLYTLIVKPDNTYEVLIDNEKVESGDLKADWD--FLPPKKIKDPEAKKPEDWDDKPTI 713
THL+TL+VKP Y V +D + + G++ +D PPK+I D KP DWD++ I
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENI 285
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 564 VKPDNTYEVLIDNEKVESGDLKADWDFLPPKKIKDPEAKKPEDWDD 701
VKPD+ E + E+ DW+ + I DPEAKKP+DWD+
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDE 336
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 597 DNEKVESGDLKADWDFLPPKKIKDPEAKKPEDWDDK 704
+N + ES DWD P+ + D A KP DW+++
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEE 318
>Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical
protein ZC434.3 protein.
Length = 474
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 597 DNEKVESGDLKADWDFLPPKKIKDPEAKKPEDWDDK 704
D K++S D+K DW + P + + PE KK + + K
Sbjct: 426 DFRKIDSDDVKPDWPYAPGSRRRAPEKKKKMNDEQK 461
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 495 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 617
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 495 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 617
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical
protein C07G1.7 protein.
Length = 205
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 374 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 252
D E + +L D ++DY+ F + E+F G+S+ R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,559,727
Number of Sequences: 27780
Number of extensions: 413404
Number of successful extensions: 1347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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