Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2299
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.2  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.2  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   9.5  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   9.5  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.5  

>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 440 YWFMVFL*RCDVVVFLVGLSLFMTHECIDSG**VKKEIKFTCASLLSFIVVNVIDIGLSL 619
           YW   F+    ++V   G+ +      +     V K+ +   ASL+S +V   I IGL +
Sbjct: 397 YWAQTFV---SIIVTPWGMDMSFPAATLMLSDFVPKQHQGIAASLVSTVVNYSISIGLGI 453

Query: 620 GEFIQTINRHK 652
              ++T   HK
Sbjct: 454 AGTVETHLNHK 464


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 590 VNVIDIGLSLGEFIQTINRHKYLLNKPSVHRCVNLYNFDF 709
           +N+   GLSL   I  +N    L+ KP+V  CV L +FDF
Sbjct: 249 INLPTGGLSLALLIFFLN----LVPKPTVSFCVFLRDFDF 284


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 605 IGLSLGEFIQTINRHKYLLNKPSVHRCVNL 694
           IG+S+G     + ++ YL   PS+  C+ L
Sbjct: 243 IGVSIGLITALLLKYSYLRRYPSIESCIIL 272


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 246 LCIPITNIIGQDLFVKMITTIKIIRWKFIVLSPLGFIFHF 127
           +C P+T I+       +I  I +   KFIV+  L  + H+
Sbjct: 101 ICAPLTAILSTSTRDAIIVDIGMKETKFIVILDLCILMHY 140


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 365 FGCLYQFILMFIVYICNYISVQICMYWFMVFL*RC--DVVVFLVGLSL 502
           FG +  FIL F  Y+C Y+  +   +    FL       VV +VG ++
Sbjct: 287 FGLVSLFILFFTKYMCQYLGKRYPRWQQAFFLTNTLRSAVVVIVGTAI 334


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 299 LVHHSIG*FYQSYINEYLHNNMFGCLYQFI 388
           +V HS+G   Q+Y   Y+H    G  +Q I
Sbjct: 324 VVAHSLGGLVQTYAVGYVHAKTHGAFFQAI 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,696
Number of Sequences: 5004
Number of extensions: 75704
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)