Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2298
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0133 + 41335752-41336021,41336123-41336290 29 2.6
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 3.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 4.6
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 29 4.6
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 6.1
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 6.1
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 6.1
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 8.0
>01_07_0133 + 41335752-41336021,41336123-41336290
Length = 145
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 465 QPYPVEKKGALPSTCPSRQTRPRQGI 542
QP PVEK+G L + P + RP++ +
Sbjct: 119 QPAPVEKEGVLVAAAPRTRNRPKREV 144
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 317 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 442
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Frame = +2
Query: 293 NCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATL 472
N + S S + P P P +A + P P PS R S++T T
Sbjct: 142 NTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTP 201
Query: 473 PSRKERCLTQYMSQSTDPSP-SRYMCQNLTP 562
P R + PSP SR M TP
Sbjct: 202 PRRSPSPASTLTPPRRSPSPASRRMSTGSTP 232
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 353 RKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKERCLT-QYMSQSTDPS 529
+K+ P+ +AR T+ + P +D T ++ P E C + ++ +
Sbjct: 189 QKQEPVAA-AARKGTVAKALFMATPK-KDASKTPAKAQAAPPLSEVCSKMRKLNLACREV 246
Query: 530 PSRYMCQNLTPLKRK 574
PSRY+CQ+ P K
Sbjct: 247 PSRYLCQSSNPKSSK 261
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 573 FLFNGVRFWHIYLDGDGSVDWD 508
F+ NG + H+++DG S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 281 PQNRNCR*ESSCSLPRRKAHPLPGRKE--NPLPRESARSPTLPRCQTCPLPS*RDCQGTS 454
PQ R+ R S S R K+ + R+ LPR +RSP R ++ R +S
Sbjct: 470 PQRRSARRSKSRSPLREKSVSMSPRRSMSKSLPRSVSRSPVARRSRSPVKARTRSISRSS 529
Query: 455 SRTATLPSRKERCLTQYMSQSTDPSP 532
+R+ SR + +S SP
Sbjct: 530 ARSLQRRSRSRSLERSPVRKSVSRSP 555
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 323 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 424
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 341 PLPGRKENPLPRESARSPTLPRCQTCPLP 427
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,287,118
Number of Sequences: 37544
Number of extensions: 265414
Number of successful extensions: 1007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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