Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2298
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128076-1|BAC87261.1|  140|Homo sapiens protein ( Homo sapiens ...    34   0.55 
M64676-1|AAA57263.1|  582|Homo sapiens potassium channel protein...    31   3.9  
BC101769-1|AAI01770.1|  582|Homo sapiens potassium voltage-gated...    31   3.9  
AL137790-1|CAI18831.1|  635|Homo sapiens potassium voltage-gated...    31   3.9  
BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology...    30   8.9  
AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens ...    30   8.9  
AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.           30   8.9  
AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.     30   8.9  

>AK128076-1|BAC87261.1|  140|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46197 fis, clone TESTI4007565. ).
          Length = 140

 Score = 33.9 bits (74), Expect = 0.55
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 296 CR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLP 427
           CR  S C  P +   P PG +    P    + PT  RC+  P P
Sbjct: 10  CRLPSCCPCPCKTGDPGPGNRRRATPMWMPKGPTQERCRPYPPP 53


>M64676-1|AAA57263.1|  582|Homo sapiens potassium channel protein
           protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 456 HVPQPYPVEKKGALPSTCPSRQTRPRQGICARTLPR*KESSCSSR 590
           HVP+P  +E     P  C S +T PR   C+ T P  +E     R
Sbjct: 495 HVPRPAQLES----PMYCKSEETSPRDSTCSDTSPPAREEGMIER 535


>BC101769-1|AAI01770.1|  582|Homo sapiens potassium voltage-gated
           channel, Shaw-related subfamily, member 4 protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 456 HVPQPYPVEKKGALPSTCPSRQTRPRQGICARTLPR*KESSCSSR 590
           HVP+P  +E     P  C S +T PR   C+ T P  +E     R
Sbjct: 495 HVPRPAQLES----PMYCKSEETSPRDSTCSDTSPPAREEGMIER 535


>AL137790-1|CAI18831.1|  635|Homo sapiens potassium voltage-gated
           channel, Shaw-related subfamily, member 4 protein.
          Length = 635

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 456 HVPQPYPVEKKGALPSTCPSRQTRPRQGICARTLPR*KESSCSSR 590
           HVP+P  +E     P  C S +T PR   C+ T P  +E     R
Sbjct: 495 HVPRPAQLES----PMYCKSEETSPRDSTCSDTSPPAREEGMIER 535


>BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology
           domain containing 1 protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 341 PLPGR--KENPLPRESARSPTLPRCQTCPLP 427
           P PGR  +E+P P++    P+ P  Q  PLP
Sbjct: 326 PEPGRPGEESPAPKQELHQPSFPTPQLSPLP 356


>AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens cDNA
            FLJ43332 fis, clone NT2RI3006340, highly  similar to
            Myomesin 1. ).
          Length = 1685

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 323  PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RD 439
            P +KA P    K +PL +++ R+P  P C    L S RD
Sbjct: 910  PPQKAAPQGKSKSDPLKKKTDRAPPSPPCDITCLESFRD 948


>AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.
          Length = 1685

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 323  PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RD 439
            P +KA P    K +PL +++ R+P  P C    L S RD
Sbjct: 910  PPQKAAPQGKSKSDPLKKKTDRAPPSPPCDITCLESFRD 948


>AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.
          Length = 797

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 341 PLPGR--KENPLPRESARSPTLPRCQTCPLP 427
           P PGR  +E+P P++    P+ P  Q  PLP
Sbjct: 344 PEPGRPGEESPAPKQELHQPSFPTPQLSPLP 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,777,750
Number of Sequences: 237096
Number of extensions: 1373156
Number of successful extensions: 4566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4553
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)