Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2298
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.4  
U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in bl...    29   4.1  

>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 401 PRCQTCPLPS*RDCQGTSSRTATLPSRKERCLTQYMSQSTDPSPSRYMCQNLTPLKRKFM 580
           P+CQ    P  + CQ T  + A  P  +++C  Q   QS   +P+   CQ  T  ++   
Sbjct: 252 PQCQQPSAPQCQQCQNTCQQAA--PVCQQQCAPQCQQQS---APACQQCQ--TSCQQTQQ 304

Query: 581 FQSKCT 598
            Q +CT
Sbjct: 305 CQQQCT 310


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 401 PRCQTCPLPS*RDCQGTSSRTATLPSRKERCLTQYMSQSTDPSPSRYMCQNLTPLKRKFM 580
           P+CQ    P  + CQ T  + A  P  +++C  Q   QS   +P+   CQ  T  ++   
Sbjct: 252 PQCQQPSAPQCQQCQNTCQQAA--PVCQQQCAPQCQQQS---APACQQCQ--TSCQQTQQ 304

Query: 581 FQSKCT 598
            Q +CT
Sbjct: 305 CQQQCT 310


>AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical
           protein T10B11.4 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
 Frame = +2

Query: 356 KENPLPRESARSPTLPRC--QTCPLPS*RD---------CQGTSSRTATLPSRKERCLTQ 502
           KE P+ + S+ SP +P+C  + C  P   +          Q T   + T  S  +  +T+
Sbjct: 43  KEEPITQTSSSSPLIPKCIKEICSSPKSIELHVIYDAPTSQATYHYSVTWESDDDFEITE 102

Query: 503 YMSQSTDPSPSRYMCQNLTPLKRK 574
            MS+ST  S S  +C   +P+  K
Sbjct: 103 -MSESTGKSCSSMVCGRYSPVSSK 125


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 311 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKER 490
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R  +  SR   
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVS-RSRSPP 146

Query: 491 CLTQYMSQSTDPSPSRY-MCQNLTPLKRKF 577
              Q  S+S  P+  R    ++ +P +R +
Sbjct: 147 PRRQQRSRSPPPAKRRRDQSRSKSPPRRNY 176


>U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 3 protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 401 PRCQTCPLPS*RDCQGTSSRTATLPSRKERCLTQYMSQSTDPSPSRYMCQNLTPLKRKFM 580
           P+CQ    P  + CQ T  ++A  P  +++C  Q   Q    +P+   CQN    ++   
Sbjct: 74  PQCQQPAAPQCQQCQNTCQQSA--PVCQQQCAPQCQQQF---APACQQCQN--SCQQTQQ 126

Query: 581 FQSKCT 598
            Q +CT
Sbjct: 127 CQQQCT 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,439
Number of Sequences: 27780
Number of extensions: 200333
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)